Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05845 and RBAM_035480

See Amino acid alignment / Visit BSNT_05845 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:22
# Commandline: needle
#    -asequence dna-align/BSNT_05845___ywcC.1.9828.seq
#    -bsequence dna-align/RBAM_035480___ywcC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05845___ywcC-RBAM_035480___ywcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05845___ywcC-RBAM_035480___ywcC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05845___ywcC
# 2: RBAM_035480___ywcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 718
# Identity:     441/718 (61.4%)
# Similarity:   441/718 (61.4%)
# Gaps:         140/718 (19.5%)
# Score: 1358.5
# 
#
#=======================================

BSNT_05845___      1 ATGAAAAAAAACAAATTTCAAATTAAAAGAGAAGCAACATTTGAAAGTAT     50
                     ||||||||||||||||||||||||||.|||||||.|||||||||||||.|
RBAM_035480__      1 ATGAAAAAAAACAAATTTCAAATTAAGAGAGAAGAAACATTTGAAAGTTT     50

BSNT_05845___     51 TATAGACGCTGGCGTGAATTTGTTGATTGACCGAGCGTATGATCCGGTTT    100
                     |||.|||||.|||.|..||.|..|||||||..||||.||.|||.|.||.|
RBAM_035480__     51 TATTGACGCAGGCCTTCATCTCCTGATTGAAAGAGCTTACGATTCAGTCT    100

BSNT_05845___    101 CTGTAGAAGATATCAGCAGAGCCGCCGGGTACAGCAAAGGAGCATTTTAT    150
                     |..|.||.||.|||||.|.|||.||.||.|.|||||||||.||.|||||.
RBAM_035480__    101 CAATCGATGACATCAGTAAAGCGGCGGGTTTCAGCAAAGGCGCGTTTTAC    150

BSNT_05845___    151 GTTCATTTTGTCAGCAAGGACGATTTTCTGCTGTACCTTCTCGAAAAACG    200
                     ||||||||||..||||||||.|||||||||..|.|..|..|.||.|..||
RBAM_035480__    151 GTTCATTTTGAAAGCAAGGAAGATTTTCTGAAGCATTTATTAGACAGGCG    200

BSNT_05845___    201 TCAGATGAAAAAAAAGATCATTATAGGGTATCTTG------------ATC    238
                     ||||||.|||||||.||||||.|..||.|||||.|            |.|
RBAM_035480__    201 TCAGATTAAAAAAAGGATCATCACTGGCTATCTCGACGAATTAGAAAAGC    250

BSNT_05845___    239 AAATGGAGCGGGAGTCAGTGAAATCGCTGACATTGGACGAGGCTGC--AA    286
                     |||..|.||||..||   |||   ||||    |||  .||.|||||  .|
RBAM_035480__    251 AAACAGCGCGGCCGT---TGA---CGCT----TTG--TGAAGCTGCGGCA    288

BSNT_05845___    287 AACACG------CTGCAGAACTGC--TTTATTCCTATTACATAAA---TA    325
                     |.|.||      ||||.||  |||  |||           .||||   .|
RBAM_035480__    289 AGCGCGGCCAGCCTGCTGA--TGCGGTTT-----------GTAAACAGCA    325

BSNT_05845___    326 AGCC----------GTCGTGGGACATCACCTCGTTTGCCATGAACATGCC    365
                     ||||          ||.|||          ||.||||||.|..|.|||||
RBAM_035480__    326 AGCCTGCCTGGAATGTTGTG----------TCTTTTGCCGTTCATATGCC    365

BSNT_05845___    366 GACATATAAAGTC-TTAAAGAA-ATGCAAGGCCTATGTCCGGCTGTACGA    413
                     .||.||.|||||| |.|..||| |||  |.||.|||.||||.||.||..|
RBAM_035480__    366 TACTTACAAAGTCGTCAGTGAATATG--AAGCTTATATCCGTCTTTATAA    413

BSNT_05845___    414 ATTGTGGGTGGAAGAAA-----ATGTGTTATATATTAAGTGGCTGAAGGA    458
                     .||.|||.|.|||||||     |||     ||.||.||.|||||.||...
RBAM_035480__    414 GTTATGGATAGAAGAAAGCACCATG-----TACATAAATTGGCTCAAATC    458

BSNT_05845___    459 GAGAAAGCTGATTGACGCCTGTATTGATCCTGAATATACGGCTAAAATAA    508
                     ||||||..|.||.||.|.|..|||.|||.||||..||||.|||||.||.|
RBAM_035480__    459 GAGAAATTTAATAGAAGACCATATAGATACTGAGCATACCGCTAACATGA    508

BSNT_05845___    509 TATGTGCAGTCCTCGACGGAATCATTAAACAATCATATGTATTGGGCCAG    558
                     |.||.||..||.|||||||.||.|||||.|||||..||||..||||...|
RBAM_035480__    509 TGTGCGCGCTCATCGACGGGATGATTAAGCAATCCAATGTGCTGGGAAGG    558

BSNT_05845___    559 CCAGCCACCTTCCGCAGCTTTTTAGACGCACTCTCGGTAT-TTTTTACTT    607
                     ||.|..||.|||||||||.|.||.|||||.|||    ||| |||||    
RBAM_035480__    559 CCGGTTACTTTCCGCAGCATGTTTGACGCGCTC----TATGTTTTT----    600

BSNT_05845___    608 TAGACAGAGAGCACGAGACGCCAAGAATTTTGAAAAGTTTTTCAG---AA    654
                       |.|||           ||.||        |||||     ||||   ||
RBAM_035480__    601 --GTCAG-----------CGGCA--------GAAAA-----TCAGGGTAA    624

BSNT_05845___    655 AGCGAGGAACATCAGTGA    672
                                       
RBAM_035480__    624 ------------------    624


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