Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05845 and RBAM_035480
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:22
# Commandline: needle
# -asequence dna-align/BSNT_05845___ywcC.1.9828.seq
# -bsequence dna-align/RBAM_035480___ywcC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05845___ywcC-RBAM_035480___ywcC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05845___ywcC-RBAM_035480___ywcC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05845___ywcC
# 2: RBAM_035480___ywcC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 718
# Identity: 441/718 (61.4%)
# Similarity: 441/718 (61.4%)
# Gaps: 140/718 (19.5%)
# Score: 1358.5
#
#
#=======================================
BSNT_05845___ 1 ATGAAAAAAAACAAATTTCAAATTAAAAGAGAAGCAACATTTGAAAGTAT 50
||||||||||||||||||||||||||.|||||||.|||||||||||||.|
RBAM_035480__ 1 ATGAAAAAAAACAAATTTCAAATTAAGAGAGAAGAAACATTTGAAAGTTT 50
BSNT_05845___ 51 TATAGACGCTGGCGTGAATTTGTTGATTGACCGAGCGTATGATCCGGTTT 100
|||.|||||.|||.|..||.|..|||||||..||||.||.|||.|.||.|
RBAM_035480__ 51 TATTGACGCAGGCCTTCATCTCCTGATTGAAAGAGCTTACGATTCAGTCT 100
BSNT_05845___ 101 CTGTAGAAGATATCAGCAGAGCCGCCGGGTACAGCAAAGGAGCATTTTAT 150
|..|.||.||.|||||.|.|||.||.||.|.|||||||||.||.|||||.
RBAM_035480__ 101 CAATCGATGACATCAGTAAAGCGGCGGGTTTCAGCAAAGGCGCGTTTTAC 150
BSNT_05845___ 151 GTTCATTTTGTCAGCAAGGACGATTTTCTGCTGTACCTTCTCGAAAAACG 200
||||||||||..||||||||.|||||||||..|.|..|..|.||.|..||
RBAM_035480__ 151 GTTCATTTTGAAAGCAAGGAAGATTTTCTGAAGCATTTATTAGACAGGCG 200
BSNT_05845___ 201 TCAGATGAAAAAAAAGATCATTATAGGGTATCTTG------------ATC 238
||||||.|||||||.||||||.|..||.|||||.| |.|
RBAM_035480__ 201 TCAGATTAAAAAAAGGATCATCACTGGCTATCTCGACGAATTAGAAAAGC 250
BSNT_05845___ 239 AAATGGAGCGGGAGTCAGTGAAATCGCTGACATTGGACGAGGCTGC--AA 286
|||..|.||||..|| ||| |||| ||| .||.||||| .|
RBAM_035480__ 251 AAACAGCGCGGCCGT---TGA---CGCT----TTG--TGAAGCTGCGGCA 288
BSNT_05845___ 287 AACACG------CTGCAGAACTGC--TTTATTCCTATTACATAAA---TA 325
|.|.|| ||||.|| ||| ||| .|||| .|
RBAM_035480__ 289 AGCGCGGCCAGCCTGCTGA--TGCGGTTT-----------GTAAACAGCA 325
BSNT_05845___ 326 AGCC----------GTCGTGGGACATCACCTCGTTTGCCATGAACATGCC 365
|||| ||.||| ||.||||||.|..|.|||||
RBAM_035480__ 326 AGCCTGCCTGGAATGTTGTG----------TCTTTTGCCGTTCATATGCC 365
BSNT_05845___ 366 GACATATAAAGTC-TTAAAGAA-ATGCAAGGCCTATGTCCGGCTGTACGA 413
.||.||.|||||| |.|..||| ||| |.||.|||.||||.||.||..|
RBAM_035480__ 366 TACTTACAAAGTCGTCAGTGAATATG--AAGCTTATATCCGTCTTTATAA 413
BSNT_05845___ 414 ATTGTGGGTGGAAGAAA-----ATGTGTTATATATTAAGTGGCTGAAGGA 458
.||.|||.|.||||||| ||| ||.||.||.|||||.||...
RBAM_035480__ 414 GTTATGGATAGAAGAAAGCACCATG-----TACATAAATTGGCTCAAATC 458
BSNT_05845___ 459 GAGAAAGCTGATTGACGCCTGTATTGATCCTGAATATACGGCTAAAATAA 508
||||||..|.||.||.|.|..|||.|||.||||..||||.|||||.||.|
RBAM_035480__ 459 GAGAAATTTAATAGAAGACCATATAGATACTGAGCATACCGCTAACATGA 508
BSNT_05845___ 509 TATGTGCAGTCCTCGACGGAATCATTAAACAATCATATGTATTGGGCCAG 558
|.||.||..||.|||||||.||.|||||.|||||..||||..||||...|
RBAM_035480__ 509 TGTGCGCGCTCATCGACGGGATGATTAAGCAATCCAATGTGCTGGGAAGG 558
BSNT_05845___ 559 CCAGCCACCTTCCGCAGCTTTTTAGACGCACTCTCGGTAT-TTTTTACTT 607
||.|..||.|||||||||.|.||.|||||.||| ||| |||||
RBAM_035480__ 559 CCGGTTACTTTCCGCAGCATGTTTGACGCGCTC----TATGTTTTT---- 600
BSNT_05845___ 608 TAGACAGAGAGCACGAGACGCCAAGAATTTTGAAAAGTTTTTCAG---AA 654
|.||| ||.|| ||||| |||| ||
RBAM_035480__ 601 --GTCAG-----------CGGCA--------GAAAA-----TCAGGGTAA 624
BSNT_05845___ 655 AGCGAGGAACATCAGTGA 672
RBAM_035480__ 624 ------------------ 624
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