Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05844 and RBAM_035470
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:22
# Commandline: needle
# -asequence dna-align/BSNT_05844___ywcD.1.9828.seq
# -bsequence dna-align/RBAM_035470___ywcD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05844___ywcD-RBAM_035470___ywcD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05844___ywcD-RBAM_035470___ywcD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05844___ywcD
# 2: RBAM_035470___ywcD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 427
# Identity: 287/427 (67.2%)
# Similarity: 287/427 (67.2%)
# Gaps: 62/427 (14.5%)
# Score: 1047.0
#
#
#=======================================
BSNT_05844___ 1 ---------------------ATGTATATCATTATGGGGGTTTTCACAAC 29
||||||||||||||||||.|.|||||.||
RBAM_035470__ 1 ATGCGCTACAGAGAAATTATGATGTATATCATTATGGGGATATTCACGAC 50
BSNT_05844___ 30 CATTGTGAATATCGCCAGCTTTTATATATTG---------GTAGAGATCA 70
|||.||||||||||||||.|||||..|..|| .|.||||
RBAM_035470__ 51 CATCGTGAATATCGCCAGTTTTTACTTTCTGACGTCGGCCTTTGAGA--- 97
BSNT_05844___ 71 TGAATGTGGATTACAAAGCCGCCACTGTTGCCGCTTGGATTTTGTCCGTG 120
||||||||||.||.||.||.||.||.|||||||||.|||||||.
RBAM_035470__ 98 ------TGGATTACAAGGCGGCGACCGTCGCTGCTTGGATTCTGTCCGTT 141
BSNT_05844___ 121 CTGTTTGCTTACATAACAAATAAATTATATGTGTTTCAGCAAAAAACACA 170
||.|||||.||..|.||.||||||.|.|||||.|||||||||||
RBAM_035470__ 142 CTATTTGCATATGTCACGAATAAACTGTATGTATTTCAGCAAAA------ 185
BSNT_05844___ 171 TGATC-------TGCAGAGCCTGCTGAAAGAGCTCACTGCTTTTTTCAGC 213
||.| |||.|||.|||.|||||||..|.||.||.|||||||||
RBAM_035470__ 186 -GACCGCGGGGATGCGGAGTCTGATGAAAGAATTGACGGCCTTTTTCAGC 234
BSNT_05844___ 214 GTTCGGGTCCTGTCTCTCGGCATAGATTTAGGCATGATGATCATTCTTGT 263
||.|||||..||||||||..|||.|||.|.|.|||||||||..||||.||
RBAM_035470__ 235 GTGCGGGTATTGTCTCTCACCATCGATCTCGCCATGATGATTCTTCTGGT 284
BSNT_05844___ 264 CGGCCAGTTCAATACAAATGAAACCTTGGCCAAAATACTCGACAACGCGG 313
|.|.||.||..|||..||.|||||.|||||.|||||...|||.||| |
RBAM_035470__ 285 CAGTCAATTTCATATGAACGAAACGTTGGCGAAAATCGCCGATAAC---G 331
BSNT_05844___ 314 TCATT---GTTGTCGTCAACTATGTTGCGAGCAAATGGCTCGTCTTTAAA 360
||||| ||.|||||||||||||..||.|||||.|||.|.|||||.|.|
RBAM_035470__ 332 TCATTATCGTAGTCGTCAACTATGCGGCCAGCAAGTGGATTGTCTTCAGA 381
BSNT_05844___ 361 AAAACAAAAGAAGAAGGGGTATGA--- 384
|||.|.||||||||.||.||.|.|
RBAM_035470__ 382 AAAGCGAAAGAAGAGGGCGTGTCATAA 408
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