Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05837 and RBAM_035430

See Amino acid alignment / Visit BSNT_05837 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:21
# Commandline: needle
#    -asequence dna-align/BSNT_05837___qoxA.1.9828.seq
#    -bsequence dna-align/RBAM_035430___qoxA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05837___qoxA-RBAM_035430___qoxA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05837___qoxA-RBAM_035430___qoxA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05837___qoxA
# 2: RBAM_035430___qoxA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 968
# Identity:     822/968 (84.9%)
# Similarity:   822/968 (84.9%)
# Gaps:          13/968 ( 1.3%)
# Score: 3557.0
# 
#
#=======================================

BSNT_05837___      1 ---------TTGTTCAGAGCATTAAAACCGTTGCTTGTATTAGCGCTGTT     41
                              ||||||||||||||.||||||||.|||.||||||||.||||
RBAM_035430__      1 GTGATCTTCTTGTTCAGAGCATTTAAACCGTTACTTTTATTAGCGATGTT     50

BSNT_05837___     42 AACTGTGGTTTTCGTCCTTGGGGGATGCAGCAATGCTTCAGTACTAGATC     91
                     ..||||.||||||||.||.||.|||||||||.|...|||.||..||||||
RBAM_035430__     51 GGCTGTTGTTTTCGTACTGGGCGGATGCAGCGACATTTCCGTTTTAGATC    100

BSNT_05837___     92 CGAAAGGACCTGTAGCTGAACAGCAAAGTGATTTAATCCTGTTATCTATC    141
                     ||||||||||||||||.||.|||||.|..|||.|.||.||.||.||.|||
RBAM_035430__    101 CGAAAGGACCTGTAGCAGACCAGCAGAAAGATCTGATTCTCTTGTCAATC    150

BSNT_05837___    142 GGATTTATGCTGTTTATCGTCGGGGTCGTCTTTGTTCTATTTACCATTAT    191
                     ||||||||||||||.||.|||||.|||||.||.||.||||||||.||.||
RBAM_035430__    151 GGATTTATGCTGTTCATTGTCGGCGTCGTTTTCGTACTATTTACAATCAT    200

BSNT_05837___    192 TTTAGTAAAATACCGCGACCGTAAAGGCAAAGATAATGGATCTTATAACC    241
                     ||||||.||.|||||||||||.|||||||||||.|..|||..|||.||.|
RBAM_035430__    201 TTTAGTGAAGTACCGCGACCGCAAAGGCAAAGACAGCGGAAATTACAAGC    250

BSNT_05837___    242 CAGAAATTCACGGTAACACGTTTTTAGAAGTAGTCTGGACAGTGATCCCA    291
                     |.||.||.|||||.||||||||.|||||||||||||||||||||||||||
RBAM_035430__    251 CCGAGATGCACGGCAACACGTTCTTAGAAGTAGTCTGGACAGTGATCCCA    300

BSNT_05837___    292 ATTTTAATCGTCATTGCACTTTCTGTGCCAACAGTACAGACGATATATTC    341
                     ||||||||.||.|||||||||||||||||.||.|||||||||||||||||
RBAM_035430__    301 ATTTTAATTGTTATTGCACTTTCTGTGCCTACCGTACAGACGATATATTC    350

BSNT_05837___    342 GTTAGAAAAAGCTCCTGAAGCAACAAAAGACAAAGAGCCTCTTGTTGTTT    391
                     ||||||||||||.||||||||.|||||.||.|||||||||||||||||||
RBAM_035430__    351 GTTAGAAAAAGCGCCTGAAGCGACAAAGGATAAAGAGCCTCTTGTTGTTT    400

BSNT_05837___    392 ATGCTACTTCGGTAGACTGGAAATGGGTATTCAGCTACCCTGAACAGGAT    441
                     ||||||||||||||||||||||||||||||||||||||||.||.||||||
RBAM_035430__    401 ATGCTACTTCGGTAGACTGGAAATGGGTATTCAGCTACCCAGAGCAGGAT    450

BSNT_05837___    442 ATTGAAACGGTCAACTACTTAAACATTCCTGTCGACCGCCCGATCTTGTT    491
                     |||||.|||||.||||||.|.|||||||||||.|||||.|||.|.||.||
RBAM_035430__    451 ATTGAGACGGTTAACTACCTGAACATTCCTGTAGACCGTCCGGTTTTATT    500

BSNT_05837___    492 CAAAATCTCATCTGCAGATTCAATGGCTTCGCTATGGATTCCTCAGCTTG    541
                     .|||||.||.||.||.|||||||||||.||||||||||||||||||||||
RBAM_035430__    501 TAAAATTTCTTCAGCCGATTCAATGGCATCGCTATGGATTCCTCAGCTTG    550

BSNT_05837___    542 GAGGACAAAAATATGCGATGGCAGGAATGCTGATGGATCAATACTTACAG    591
                     |.|||||||||||.||||||||.|||||||||||||||||||||||||||
RBAM_035430__    551 GGGGACAAAAATACGCGATGGCGGGAATGCTGATGGATCAATACTTACAG    600

BSNT_05837___    592 GCTGACAAAGTGGGTACTTACGAAGGCCGCAACGCGAACTTCACAGGTGA    641
                     ||||||||||||||.||.||.|||||||||||||||||||||||.||.||
RBAM_035430__    601 GCTGACAAAGTGGGAACATATGAAGGCCGCAACGCGAACTTCACCGGCGA    650

BSNT_05837___    642 ACACTTTGCAGACCAAGAGTTTGATGTGAATGCAGTCACAGAAAAAGACT    691
                     |||||||||.|||||..|.||..|.||.||.||.||.||..|||||||||
RBAM_035430__    651 ACACTTTGCCGACCAGAAATTCAACGTAAAAGCTGTTACGCAAAAAGACT    700

BSNT_05837___    692 TTAACAGCTGGGTGAAAAAGACTCAGAACGAGGCTCCTAAGCTGACAAAA    741
                     |||||||||||||||||||..|.||.|.|||..||||.||||||||.|||
RBAM_035430__    701 TTAACAGCTGGGTGAAAAAAGCCCAAAGCGATTCTCCAAAGCTGACGAAA    750

BSNT_05837___    742 GAGAAGTATGATGAATTGATGCTTCCTGAAAATGTGGACGAATTAACGTT    791
                     |||||||||||.|||.||||||||||.||.|||||.|...||||||||||
RBAM_035430__    751 GAGAAGTATGACGAACTGATGCTTCCGGAGAATGTCGGTAAATTAACGTT    800

BSNT_05837___    792 CTCTTCTACTCACTTGAAATACGTTGATCACGGACAAGACGCTGAGTACG    841
                     |||||||||.|||||.|||||||||||.|||||.|||||.||.||.||.|
RBAM_035430__    801 CTCTTCTACACACTTAAAATACGTTGACCACGGCCAAGATGCCGAATATG    850

BSNT_05837___    842 CGATGGAGGCGCGCAAACGCCTTGGCTATCAAGCCGTTTCACCGCACTCT    891
                     ||||||||||||||||||||||||||||..|||||||.||||||||||||
RBAM_035430__    851 CGATGGAGGCGCGCAAACGCCTTGGCTACAAAGCCGTATCACCGCACTCT    900

BSNT_05837___    892 AAAACAGATCCGTTTGAAAACGTAAAGAAAAACGAATTTAAGAAG--TCT    939
                     |||||||||||||..|||||.|||||||||||||||||||  |||  ||.
RBAM_035430__    901 AAAACAGATCCGTGGGAAAATGTAAAGAAAAACGAATTTA--AAGTATCC    948

BSNT_05837___    940 GATGATACAGAAGAATGA    957
                     ||.||||.|.||||.|||
RBAM_035430__    949 GACGATAAACAAGATTGA    966


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