Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05833 and RBAM_035400
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:21
# Commandline: needle
# -asequence dna-align/BSNT_05833___qoxD.1.9828.seq
# -bsequence dna-align/RBAM_035400___qoxD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05833___qoxD-RBAM_035400___qoxD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05833___qoxD-RBAM_035400___qoxD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05833___qoxD
# 2: RBAM_035400___qoxD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 376
# Identity: 307/376 (81.6%)
# Similarity: 307/376 (81.6%)
# Gaps: 8/376 ( 2.1%)
# Score: 1258.5
#
#
#=======================================
BSNT_05833___ 1 ATGGCAAACAAATCTGCTGAACACAGTCACTTTCCATGGAAACACATTGT 50
||||||||||||||||||||||||||.||||||||.|||||.||.||.||
RBAM_035400__ 1 ATGGCAAACAAATCTGCTGAACACAGCCACTTTCCGTGGAAGCATATCGT 50
BSNT_05833___ 51 AGGTTTTATCCTGTCTATCGTTTTGACCCTGCTGGCTCTATGGGTTGCAG 100
|||||||....|||||||..||.|||||||||||||.||.||||||||||
RBAM_035400__ 51 AGGTTTTGCGTTGTCTATTATTCTGACCCTGCTGGCCCTTTGGGTTGCAG 100
BSNT_05833___ 101 TGTATACTGACCTGAGCTCATCAGCAAAACTTTGGATTATCTTCGGCTTC 150
|.|||||.||..|.|||.|||||||||||||.|||||.||.|||||||||
RBAM_035400__ 101 TATATACGGAATTAAGCCCATCAGCAAAACTCTGGATCATTTTCGGCTTC 150
BSNT_05833___ 151 GCCTTCATTCAGGCGGCGCTGCAGCTTCTCATGTTCATGCATATGACAGA 200
||.||.||.||.||.|..||.||||||||||||||||||||.||||||||
RBAM_035400__ 151 GCATTTATCCAAGCCGGTCTTCAGCTTCTCATGTTCATGCACATGACAGA 200
BSNT_05833___ 201 GAGCGAAAACGGCACGATCCAAGTCGGAAACACGCTGTTCGGATTCTTTG 250
.||||||||||||...||.|||||||||||||||||.||||||||.||.|
RBAM_035400__ 201 AAGCGAAAACGGCGGAATTCAAGTCGGAAACACGCTCTTCGGATTTTTCG 250
BSNT_05833___ 251 GCGCGATCGTTATCGTACTTGGATCCATCTGGATTTTCGCGGCTCACTAT 300
|.|||||.||||||.|.|||||.|||||||||||.||.|||||.|||||.
RBAM_035400__ 251 GAGCGATTGTTATCATCCTTGGTTCCATCTGGATCTTTGCGGCGCACTAC 300
BSNT_05833___ 301 CACCATGGTGACCATATGGACGGAAATCCTCCTGGAGGCGCTGAACACTC 350
||.||.||||||||||||||.|||||.||||||||.||.|| ||
RBAM_035400__ 301 CATCACGGTGACCATATGGATGGAAACCCTCCTGGCGGTGC-GA------ 343
BSNT_05833___ 351 AG-AGCATTCAGGCCATAACGAATAA 375
|| |.|||||.|..|||.|.||||||
RBAM_035400__ 344 AGCATCATTCCGAACATCAGGAATAA 369
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