Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_04115 and RBAM_035380
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:26:30
# Commandline: needle
# -asequence dna-align/BSNT_04115.1.9828.seq
# -bsequence dna-align/RBAM_035380___ysnE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_04115-RBAM_035380___ysnE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04115-RBAM_035380___ysnE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04115
# 2: RBAM_035380___ysnE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 488
# Identity: 270/488 (55.3%)
# Similarity: 270/488 (55.3%)
# Gaps: 139/488 (28.5%)
# Score: 840.5
#
#
#=======================================
BSNT_04115 0 -------------------------------------------------- 0
RBAM_035380__ 1 GTGGACGTAAGGAAAGAAGATGTCACAGCGCAGGACGTCATTGTGCTTTT 50
BSNT_04115 1 -------------------------ATG---TCCCCGCCGGAAAGCATCC 22
||| ||.||.||||||||.||.|
RBAM_035380__ 51 ACAGGATCATCTGAAGAGCATGACCATGCATTCTCCTCCGGAAAGTATAC 100
BSNT_04115 23 ATGC-CTTA----GGTTTAGAGAAACTAAGAGGC--------CCTGGAAT 59
|||| ||.| || |..||| ||||...|
RBAM_035380__ 101 ATGCGCTCAATGCGG-------------ACCGGCTGCGTCAGCCTGACGT 137
BSNT_04115 60 AACATTTTGGAGTGCATGGGAGGGTGATGAA---------CTAGC-CGGT 99
.||.||||||||||| |||| ||| || || |||.
RBAM_035380__ 138 TACGTTTTGGAGTGC----GAGG-----GAAAACGGCATCCT-GCTCGGC 177
BSNT_04115 100 TGCGGAGCGCTAAAAGAACTGGACAGCTGGCACGGAGAAGTCAAATCAAT 149
|||||.||..||||.||.||..|||||.|||||||.||..||||||||||
RBAM_035380__ 178 TGCGGTGCCTTAAAGGAGCTAAACAGCCGGCACGGTGAGATCAAATCAAT 227
BSNT_04115 150 GCGAACATCT--GCATCACATTTAAGAAAAGGCGTTGCCAAACAAGTTCT 197
|..|||.||| |||| |||.|.|||||||||||||||||.|...|.||
RBAM_035380__ 228 GAAAACCTCTCCGCAT--CATGTCAGAAAAGGCGTTGCCAACCGGATCCT 275
BSNT_04115 198 CCAGCATATCATTGAAGAAGCCGAGAAGCGAGGCTATGAGCGACTAAGCT 247
||..|||||..||||||||||...|.||||.||||||.||||..|.||||
RBAM_035380__ 276 CCGCCATATGCTTGAAGAAGCAAGGCAGCGGGGCTATCAGCGGATCAGCT 325
BSNT_04115 248 TAGAAACGGGTTCAATGGCTTCATTTGAGCCGGCAAGAAAATTGTATG-- 295
|||||||.|||||.||||...|.|||...||.||.|||....||||||
RBAM_035380__ 326 TAGAAACCGGTTCTATGGAGGCTTTTCTCCCCGCCAGACGCCTGTATGAA 375
BSNT_04115 296 AAAGCTTCGGTTTCCAGTATTGTGAACCGTTTGCAGACTACGATGAAGAT 345
||||| |||.||.||.||||||||.|||||||||.|.||..|.||.||.
RBAM_035380__ 376 AAAGC--CGGGTTTCAATATTGTGATCCGTTTGCACATTATAAAGAGGAC 423
BSNT_04115 346 CCAAACAGTGTGTTTATGAAG---AAGGAATTG--TGA 378
||.|||||..|||||||||.| || .||.| |||
RBAM_035380__ 424 CCGAACAGCTTGTTTATGACGTTAAA--CATAGGCTGA 459
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