Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05829 and RBAM_035370
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:21
# Commandline: needle
# -asequence dna-align/BSNT_05829___rodA.1.9828.seq
# -bsequence dna-align/RBAM_035370___rodA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05829___rodA-RBAM_035370___rodA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05829___rodA-RBAM_035370___rodA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05829___rodA
# 2: RBAM_035370___rodA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1232
# Identity: 867/1232 (70.4%)
# Similarity: 867/1232 (70.4%)
# Gaps: 94/1232 ( 7.6%)
# Score: 2881.0
#
#
#=======================================
BSNT_05829___ 1 ATGAGTCGATATAAGAAACAGCAAAGCCCCTTTTACCAGGGGGATTTGAT 50
|||||||||||||||||||||||||..||||.|||.||||||||||||||
RBAM_035370__ 1 ATGAGTCGATATAAGAAACAGCAAAATCCCTATTATCAGGGGGATTTGAT 50
BSNT_05829___ 51 TTTTATATTTGGTGTGTTTTTTATTATAAGCGTAGTATCAATTTATGCTG 100
|||||||||||||||||||||.||.||.||.||.|...|.||||||||.|
RBAM_035370__ 51 TTTTATATTTGGTGTGTTTTTAATAATTAGTGTTGCGGCGATTTATGCGG 100
BSNT_05829___ 101 CCGGTCAGTTTGGGCAGTATGGGAACACG-GAT---TGGATTCAG-CAAA 145
||||.|||||.||||||||.|| |.| ||| |||| |.|| ||.|
RBAM_035370__ 101 CCGGACAGTTCGGGCAGTACGG----AAGTGATGCCTGGA-TGAGACAGA 145
BSNT_05829___ 146 TTGTGTTTTATTTTTTGGGGGCTGTTGCCAT--TACAGT-TCTTTTGTAC 192
|.||.||||||.|..|.||.||.|.|..||| | |||| || .||||.
RBAM_035370__ 146 TCGTCTTTTATGTCATCGGAGCCGGTCTCATGGT-CAGTATC--ATGTAT 192
BSNT_05829___ 193 TTTGATTTAGAACAGCTTGAAAAGTTAAGTTTATATATTTTTATCATTGG 242
|||||||||||.|||||||||||..|.|||.|.||..|.||.||....||
RBAM_035370__ 193 TTTGATTTAGAGCAGCTTGAAAAACTGAGTCTGTACGTGTTAATTGCCGG 242
BSNT_05829___ 243 TATTTTATCTTTGATTATTCTTAAAATCAGT------CCCGAGTCTATTG 286
..|..|.||..||.|..|| ||| .|| ||.||.||.||.|
RBAM_035370__ 243 CGTGCTGTCGCTGCTCCTT-TTA-----CGTGTGGCGCCGGAATCCATCG 286
BSNT_05829___ 287 CACCTGTTATTAAAGGGGCAAAAAGTTGGTTTAGGATCGGTAGAATAACA 336
|.||..|||..||.||.||.||.||.|||||||..|||||.||..|.||.
RBAM_035370__ 287 CGCCGATTAAAAACGGAGCGAAGAGCTGGTTTAAAATCGGCAGCTTTACC 336
BSNT_05829___ 337 ATACAGCCGTCAGAGTTTATGAAGGTTGGTTTGATTATGATGCTTGCTTC 386
.|.|||||.||.|||||.|.|||..|.||..|.||.||||||.|.||.||
RBAM_035370__ 337 CTCCAGCCCTCTGAGTTCACGAAAATAGGAATTATGATGATGGTCGCGTC 386
BSNT_05829___ 387 AGTTATTGGAAAAGCAAA-----TCCTAAAGGAGTTC---GGACGCTTAG 428
..|||| |.|.|| .||..||||| || ||.|.|||||
RBAM_035370__ 387 CATTAT------ATCGAAGGCGGGCCCGAAGGA--TCAAAGGTCACTTAG 428
BSNT_05829___ 429 GGATGAT----ATCCACTTGTTATTAAAGATTGCGGGTGTCGCA------ 468
|||.||| ||| ||.|.||.||.|||||| |||
RBAM_035370__ 429 GGAAGATGTGAATC----TGCTTTTGAAAATTGCG------GCATGGACG 468
BSNT_05829___ 469 GTTATTCCTGTAGGTCTTATCTTGATGCAGGATGCTGGGAC---TGCGGG 515
||||||||..|.||..|.|||.|..||||||||||.||.|| ||||
RBAM_035370__ 469 GTTATTCCGATCGGGATGATCGTTTTGCAGGATGCCGGAACGGGTGCG-- 516
BSNT_05829___ 516 AATATGTATGTTTATCGTTCTTGTAATGGTTTTTATGTCAGGGATAAACT 565
||.|||.|||||||||||.|.||.|||||.||||||||.||..||||||
RBAM_035370__ 517 -ATCTGTCTGTTTATCGTTATGGTGATGGTGTTTATGTCGGGTGTAAACT 565
BSNT_05829___ 566 GGAAATTGATTGCGATCATAGCTGGTTCAGGTATCTTACTCATTTCATT- 614
||||..||||..|.|||||.|..||||| ||.|.| ||| |.|..||
RBAM_035370__ 566 GGAAGCTGATCACCATCATCGGCGGTTC-GGCAGC--ACT--TGTGCTTG 610
BSNT_05829___ 615 -AATTTTATTAG---TAATGATAAACTTTCCTGACGTTGCTAAATCAGTT 660
..||||.|||| |..||||..|.|||||..|.||.||.||.|||.|.
RBAM_035370__ 611 GCCTTTTCTTAGTGCTGGTGATTGAATTTCCCCATGTGGCGAATTCAATC 660
BSNT_05829___ 661 GGAATACAGGATTATCAAATTAAGCGCGTCACTTCTTGGGTGTCTGCTTC 710
||.||...|||||||||||||||.||..|.||.||.|||.||||||..||
RBAM_035370__ 661 GGCATTGCGGATTATCAAATTAACCGGATTACATCGTGGATGTCTGACTC 710
BSNT_05829___ 711 AAATG------AGACACAGGAAGATTCAAATGACAGCTGGCAAGTTGACC 754
.|.|| .|||.||||.|||.....||.|.||||||||.||.||.|
RBAM_035370__ 711 CAGTGCGGCAACGACTCAGGCAGAGAGCGATAAAAGCTGGCAGGTGGATC 760
BSNT_05829___ 755 AGGCCATCATGGCAATAGGATCTGGTGGTATTTTAGGTAATGGTATTTCT 804
|||||.|.|||||.||.|||||.||.||.|||...||.||.||..||..|
RBAM_035370__ 761 AGGCCGTTATGGCGATCGGATCGGGCGGCATTACCGGAAACGGCGTTCAT 810
BSNT_05829___ 805 AATTTGAAGGTTTATGTTCCAGAGAGTAC-GACTGACTTTATCTTTTCTA 853
|||.|||||||.||.||.||.||| |.|| |||.||||||||||||.|.|
RBAM_035370__ 811 AATCTGAAGGTGTACGTACCTGAG-GGACAGACCGACTTTATCTTTGCGA 859
BSNT_05829___ 854 TAATAGGTG--AGTCATTTGGCTTTATAGGCTGTGCAGTTGTTGTCATCA 901
|..|.|||| ||| |||||.|||.|||||||.||..|||..||..|||
RBAM_035370__ 860 TTTTGGGTGAAAGT--TTTGGATTTTTAGGCTGCGCCATTGCGGTTGTCA 907
BSNT_05829___ 902 TGTTCTTCTTTTTAATCTACAGGCTTGTCGTTCTGATAGACAAAATACAT 951
||||.|||||||||||.|||||.|||||.||.|||||.|||....|.|||
RBAM_035370__ 908 TGTTTTTCTTTTTAATTTACAGACTTGTGGTGCTGATTGACCGCTTGCAT 957
BSNT_05829___ 952 CCGTTTAACCG-TTTCGCTTCTTTCTTTTGCGTTGGCTATACGGCGTTAA 1000
.|||||||||| |||.|| .|.||.||||||||.||.|.|||.||..|.|
RBAM_035370__ 958 GCGTTTAACCGATTTGGC-GCGTTTTTTTGCGTAGGATTTACTGCACTTA 1006
BSNT_05829___ 1001 TTGTGATCCACACATTCCAGAATATCGGAATGAACATCGGCATTATGCCT 1050
|.|||||.|||||.||||||||.|||||.|||||.||||||||||||||.
RBAM_035370__ 1007 TCGTGATTCACACCTTCCAGAACATCGGGATGAATATCGGCATTATGCCG 1056
BSNT_05829___ 1051 GTTACCGGGATTCCGCTGCTGTTTGTCAGCTATGGGGGAAGCTCGACACT 1100
||||||||.|||||||||||||||||||||||||||||.||||||...||
RBAM_035370__ 1057 GTTACCGGTATTCCGCTGCTGTTTGTCAGCTATGGGGGGAGCTCGGTGCT 1106
BSNT_05829___ 1101 TTCCACGTTAATCGGATTTGGGATTGTATATAATGCAAGTGTGCAGCTGA 1150
|||.||.||||||.|.||.|||||.||||||||.||||||||||||||||
RBAM_035370__ 1107 TTCTACATTAATCAGCTTCGGGATCGTATATAACGCAAGTGTGCAGCTGA 1156
BSNT_05829___ 1151 CGAAATACAGAAGTTATCTTTTTAATTCTTAA 1182
|||||||.|.|||.||.||.||.|||||||||
RBAM_035370__ 1157 CGAAATATAAAAGCTACCTGTTCAATTCTTAA 1188
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