Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05809 and RBAM_035200

See Amino acid alignment / Visit BSNT_05809 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:19
# Commandline: needle
#    -asequence dna-align/BSNT_05809___ywdI.1.9828.seq
#    -bsequence dna-align/RBAM_035200___ywdI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05809___ywdI-RBAM_035200___ywdI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05809___ywdI-RBAM_035200___ywdI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05809___ywdI
# 2: RBAM_035200___ywdI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 344
# Identity:     235/344 (68.3%)
# Similarity:   235/344 (68.3%)
# Gaps:          43/344 (12.5%)
# Score: 737.5
# 
#
#=======================================

BSNT_05809___      1 ATGAACATTCATATATCTGCATTAATTCAAAAGATGGAAGAGGAGCTGAA     50
                     ||||||||.|||||.|||||.||.|||||.|||||||||||.||.||||.
RBAM_035200__      1 ATGAACATACATATCTCTGCTTTGATTCAGAAGATGGAAGAAGAACTGAG     50

BSNT_05809___     51 AAAAGCAAAAACAGCTGAACGGGA-TGAGGAGCTGAAGCGTTATGTA-GC     98
                     ..|.||.|||||.|| ||.|.|.| .||||||.|.||    .|||.| ||
RBAM_035200__     51 GCAGGCGAAAACGGC-GACCCGCACCGAGGAGGTCAA----AATGCACGC     95

BSNT_05809___     99 GGTTG---TCCGTTCTCTGTGTGATGTCGTGCTTG---ATCAGCCGGAGA    142
                     ||..|   ||||.||||||||||||||||||||.|   .||||.||.|.|
RBAM_035200__     96 GGCCGCCATCCGCTCTCTGTGTGATGTCGTGCTCGGCACTCAGACGCACA    145

BSNT_05809___    143 ACGTGAGC----GCGCC----------CCGCATACAGCCG--AGCGTTAC    176
                     .|    ||    |||||          |||..|    |||  ||||  .|
RBAM_035200__    146 CC----GCTCCGGCGCCTGTGCAGAATCCGATT----CCGAAAGCG--GC    185

BSNT_05809___    177 GCCAAGTCCCGCCGCGCCGCCATCGACAGACCAGCTGATGATGGAAAAAA    226
                     |||.|..||..|||||.|.||.||||||||||.||||.||.|.|||||||
RBAM_035200__    186 GCCGAAACCTTCCGCGTCTCCTTCGACAGACCCGCTGCTGCTTGAAAAAA    235

BSNT_05809___    227 TGATGGGGAGCGCGGGATTAAACAAATTTC-GAAAGCAAGAAAAAGA-GA    274
                     |||||||.|||||.||..|.|||.|||.|| |||| .|||..||||| ||
RBAM_035200__    236 TGATGGGCAGCGCCGGGCTGAACCAATATCAGAAA-AAAGCGAAAGACGA    284

BSNT_05809___    275 AGCAGGAAGAGGATGGAAACGGAGAGTCTTTATTTGATTTTTAA    318
                     | |..||.||.||.||||||||.||.||..|.||.|||||||||
RBAM_035200__    285 A-CGTGAGGAAGACGGAAACGGGGATTCCATTTTCGATTTTTAA    327


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