Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05806 and RBAM_035180
See
Amino acid alignment /
Visit
BSNT_05806 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:19
# Commandline: needle
# -asequence dna-align/BSNT_05806___ywdK.1.9828.seq
# -bsequence dna-align/RBAM_035180___ywdK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05806___ywdK-RBAM_035180___ywdK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05806___ywdK-RBAM_035180___ywdK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05806___ywdK
# 2: RBAM_035180___ywdK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 374
# Identity: 298/374 (79.7%)
# Similarity: 298/374 (79.7%)
# Gaps: 4/374 ( 1.1%)
# Score: 1181.0
#
#
#=======================================
BSNT_05806___ 1 ATGAAAGTTTTTATCATATTAGGGGCTATTAACGCCCTGCTTGCCGTGGG 50
||||||||.|||||.||..|.||.||.||||||||..|..|.|||||||.
RBAM_035180__ 1 ATGAAAGTGTTTATTATTCTTGGTGCGATTAACGCTTTATTGGCCGTGGC 50
BSNT_05806___ 51 ACTCGGAGCATTCGGCGCTCACGGATTAGAAGGGAAAATACCTGATAAAT 100
.||.||.||.||||||||.||.||..|.|||||||||||.||.|||||||
RBAM_035180__ 51 GCTGGGCGCTTTCGGCGCGCATGGGCTTGAAGGGAAAATCCCCGATAAAT 100
BSNT_05806___ 101 ATCTTCAGGTTTGGCACACAGGCGTGCAGTATCATATGTATCACGCCCTT 150
||.|.|||||.|||||||||||||||||.|||||||||||||||||.||.
RBAM_035180__ 101 ATTTGCAGGTGTGGCACACAGGCGTGCAATATCATATGTATCACGCGCTC 150
BSNT_05806___ 151 GGGTTATTCGTTGTCGCGTTTCTGGCTGATAAATTATCCGGCATAGGCAG 200
||..|.||.||||||||||||.||||.||.||..|.||.|||..||||||
RBAM_035180__ 151 GGTCTTTTGGTTGTCGCGTTTTTGGCCGAAAAGCTTTCTGGCGCAGGCAG 200
BSNT_05806___ 201 TGTCACGACAGCCGGCTGGCTGATGTTTGCGGGAATTGTGCTGTTTTCCG 250
|||..|....||.||||||||||||||||||||.||.||.||||||||.|
RBAM_035180__ 201 TGTTTCTGTTGCGGGCTGGCTGATGTTTGCGGGCATCGTTCTGTTTTCAG 250
BSNT_05806___ 251 GAAGCTTATA--TATTCTAAGTGTGACGCAAATCTCCATTCTTGGAGCGA 298
|||||.|.|| ||| |.||.||||||||.||.||||||||.||.||||
RBAM_035180__ 251 GAAGCCTGTACGTAT--TGAGCGTGACGCAGATTTCCATTCTCGGCGCGA 298
BSNT_05806___ 299 TCACCCCGCTCGGCGGTGTGGCGTTTATTATTTCTTGGATTATGATCGTT 348
|.||.|||||||||||.|||||||||||.||.||||||||||||||..|.
RBAM_035180__ 299 TTACACCGCTCGGCGGCGTGGCGTTTATCATCTCTTGGATTATGATTATC 348
BSNT_05806___ 349 GTCGCAGCCGTCAAATATCTATAA 372
|||||.||||||||||||.|||||
RBAM_035180__ 349 GTCGCGGCCGTCAAATATTTATAA 372
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.