Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05801 and RBAM_035160

See Amino acid alignment / Visit BSNT_05801 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:18
# Commandline: needle
#    -asequence dna-align/BSNT_05801___spsA.1.9828.seq
#    -bsequence dna-align/RBAM_035160___spsA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05801___spsA-RBAM_035160___spsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05801___spsA-RBAM_035160___spsA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05801___spsA
# 2: RBAM_035160___spsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 796
# Identity:     600/796 (75.4%)
# Similarity:   600/796 (75.4%)
# Gaps:          50/796 ( 6.3%)
# Score: 2258.0
# 
#
#=======================================

BSNT_05801___      1 TTGCCTAAAGTATCAGTCATTATGACGAGCTATAACAAAAGCGATTATGT     50
                     |||||||||||.|||||.||.||||||||||||||||||||.||.|||||
RBAM_035160__      1 TTGCCTAAAGTGTCAGTGATCATGACGAGCTATAACAAAAGTGACTATGT     50

BSNT_05801___     51 GGCAAAGTCCATTTCTAGCATACTCTCACAAACGTTTTCAGATTTTGAAT    100
                     |||....||.|||...||.||.||.||.||.||||||.|.||.|||||..
RBAM_035160__     51 GGCCCGCTCTATTAAAAGTATTCTGTCTCAGACGTTTACGGACTTTGAGC    100

BSNT_05801___    101 TGTTTATTATGGATGACAACTCCAATGAAGAGAC----GCTGAATGTAAT    146
                     ||||.|||||||||||||||||.|||||||.|||    ||.||    |||
RBAM_035160__    101 TGTTCATTATGGATGACAACTCAAATGAAGCGACATTGGCGGA----AAT    146

BSNT_05801___    147 CCGTCCTTTTTTGAATGATAACCGAGTGCGTTTTTATCAAAGCGATGTAT    196
                     .|||||||||.|.|..|||.||||.||.||.|||||||||||||||||||
RBAM_035160__    147 ACGTCCTTTTCTCACGGATGACCGCGTCCGGTTTTATCAAAGCGATGTAT    196

BSNT_05801___    197 CTGGAGTGAAGGAAAGAACAGAAAAAACGAGATACGCGGCACTGATCAAT    246
                     |.||.||.||.||||||||.||||||||..|.|||||.||..||||.|||
RBAM_035160__    197 CGGGCGTCAAAGAAAGAACGGAAAAAACACGCTACGCCGCCTTGATTAAT    246

BSNT_05801___    247 CAGGCGATTGAGATGGCGGAGGGTGAATATATCACCTATGCGACGGATGA    296
                     |||||.||.||.|||||||||||.||.||..|.||.||||||||.||.||
RBAM_035160__    247 CAGGCAATAGAAATGGCGGAGGGCGAGTACGTGACGTATGCGACCGACGA    296

BSNT_05801___    297 CAACATCTATATGCCGGACCGCCTCCTGAAAATGGTGCAGGAGCTCGAT-    345
                     |||||..|||.|||||||.||.||...||||||||||.|.|||||.||| 
RBAM_035160__    297 CAACACGTATGTGCCGGAACGGCTTGAGAAAATGGTGAAAGAGCTTGATG    346

BSNT_05801___    346 ---ACCCATTCTGAAAAGGCTGTGATTTACTCAGCCTCCAAAACCTATCA    392
                        |||    |.|||||.||.||..|.||.|||...||||||||||||||
RBAM_035160__    347 AAGACC----CGGAAAAAGCCGTCGTGTATTCAAGTTCCAAAACCTATCA    392

BSNT_05801___    393 TTTAAACGAGAATC-GC-----GACATTGTAAAAGAAACTGTCAGGCCTG    436
                     |||      ||||| ||     ||.|..||.||.||.||.|.||||||.|
RBAM_035160__    393 TTT------GAATCAGCGGAAAGAGACGGTGAAGGAGACGGCCAGGCCCG    436

BSNT_05801___    437 CCGCTCAA------GTGACATGGAACGCACCGTGCGCAATTGATCATTGC    480
                     |||   ||      |||   ||||||||.||||||||.|||||.|||||.
RBAM_035160__    437 CCG---AACGGATCGTG---TGGAACGCGCCGTGCGCCATTGACCATTGT    480

BSNT_05801___    481 TCGGTGATGCACAGGTATTCGGTGCTTGAGAAGGT-AAAGGAGAAGTTTG    529
                     |||||.||||||.|||.|||.|||||.||..|||| |||...|.| ||.|
RBAM_035160__    481 TCGGTCATGCACCGGTTTTCCGTGCTGGAACAGGTCAAATCGGCA-TTCG    529

BSNT_05801___    530 GCTCCTATTGGGATGAAAGCCCGGCGTTTTACCGTATAGGAGATGCGCGG    579
                     |.||||||||||||||||||||||||||||||||.||.||.||.||.||.
RBAM_035160__    530 GTTCCTATTGGGATGAAAGCCCGGCGTTTTACCGGATCGGTGACGCCCGT    579

BSNT_05801___    580 TTCTTTTGGAGAGTCAATCATTTTTATCCGTTTTACCCGCTGGATGAGGA    629
                     |||||.||||||||.||||||||||||||||||||||||.|...||||||
RBAM_035160__    580 TTCTTCTGGAGAGTGAATCATTTTTATCCGTTTTACCCGATTTCTGAGGA    629

BSNT_05801___    630 GCTGGACCTGAATTATATTACCGACCAATCGATTCACTTTCAGCTGTTTG    679
                     |||.||..|.||||||||||||||.|||||.||.||.|.||||||.||.|
RBAM_035160__    630 GCTTGATATCAATTATATTACCGATCAATCCATCCATTATCAGCTTTTCG    679

BSNT_05801___    680 AATCAGAAAAAAATGAATTTGTCAGGAACCTTCCTCCGCAG----CGAAA    725
                     ...|.||.|||||.||.|||||.|..|.||||||.|.||||    ||   
RBAM_035160__    680 CGGCGGAGAAAAACGAGTTTGTGAACAGCCTTCCGCAGCAGACCACG---    726

BSNT_05801___    726 TTGCCGAGAGCTGCGTGAATCATTAAAAAAGCTTGGAATGGGGTGA    771
                      |||||.||||||.|.||||||||||||||||||||||.|||||||
RBAM_035160__    727 -TGCCGGGAGCTGAGGGAATCATTAAAAAAGCTTGGAAAGGGGTGA    771


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