Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05791 and RBAM_035090

See Amino acid alignment / Visit BSNT_05791 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:18
# Commandline: needle
#    -asequence dna-align/BSNT_05791___spsI.1.9828.seq
#    -bsequence dna-align/RBAM_035090___spsI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05791___spsI-RBAM_035090___spsI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05791___spsI-RBAM_035090___spsI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05791___spsI
# 2: RBAM_035090___spsI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 756
# Identity:     585/756 (77.4%)
# Similarity:   585/756 (77.4%)
# Gaps:          33/756 ( 4.4%)
# Score: 2292.5
# 
#
#=======================================

BSNT_05791___      1 GTGAAAGGTGTTATTTTAGCCGGAGGAAACGGCTCACGCCTTATGCCCTT     50
                     ||||||||||||||.|||||||||||.|.||||||||||||||||||..|
RBAM_035090__      1 GTGAAAGGTGTTATCTTAGCCGGAGGCACCGGCTCACGCCTTATGCCGCT     50

BSNT_05791___     51 AACGAAAGCCGTCAACAAGCATTTGCTTCCTGTAGGCCCGTATCCGATGA    100
                     .||.|||||.|||||.||||||||.||.|||||.||.||.||||||||||
RBAM_035090__     51 GACAAAAGCGGTCAATAAGCATTTACTCCCTGTCGGTCCATATCCGATGA    100

BSNT_05791___    101 TATACTGGTCGATTATGAAGCTGGAAGAAGCCGGAATAAAAGACATTTTA    150
                     |.|||||||||.|.|||||||||||||||||.||.||.|.|||.||.||.
RBAM_035090__    101 TTTACTGGTCGGTCATGAAGCTGGAAGAAGCGGGGATTACAGATATCTTG    150

BSNT_05791___    151 CTCATCAGCCAAAAGGAGCATATGCCGCAATTTTACAAACTGCTTGGGAA    200
                     ||.||.|..|||||.||..||||.|||||||||.|.|||||.||.|..|.
RBAM_035090__    151 CTGATTACGCAAAAAGAATATATTCCGCAATTTCATAAACTTCTCGAAAC    200

BSNT_05791___    201 CGGGGAAGAGCTTGGCGTTACTATCACTTATCAAGTACAGCCGGCAGCAT    250
                     |||.||||||||.|||||..|.|||||.|||||.||.|||||.||.||||
RBAM_035090__    201 CGGAGAAGAGCTCGGCGTCTCAATCACATATCAGGTTCAGCCAGCCGCAT    250

BSNT_05791___    251 CGGGCATTTCGGATGGGCTGTCTTATGCAAAGCGCTTTA-----CGAAAA    295
                     |.||||||||.||.||..|.||.||.||||||||.||||     ||    
RBAM_035090__    251 CCGGCATTTCCGACGGTTTATCATACGCAAAGCGATTTACCGGGCG----    296

BSNT_05791___    296 AAGAGTCTTTCATTTTATTATTAGGTGATAATATATTTGAAGATTCATTA    345
                      .||..|.|||.||.|..|.||.||.||||||||.|||||||||||||||
RBAM_035090__    297 -CGATCCGTTCGTTCTGCTTTTGGGAGATAATATTTTTGAAGATTCATTA    345

BSNT_05791___    346 AAGCCTTATACAGAACGCTTTGAACAGCAGGGGAAAGGAGCAAAAGTGCT    395
                     ||.||||||||.||.||.||.|.|.|||||||.||||||||.||||||||
RBAM_035090__    346 AAACCTTATACGGAGCGTTTCGCAAAGCAGGGAAAAGGAGCGAAAGTGCT    395

BSNT_05791___    396 TCTGAAAGAAGTTGATGACCCGGAACGTTTCGGGATTGCTGAGATTGATG    445
                     .|||||||||||.||.||.|||||.||.|||||.||.||.||||||||||
RBAM_035090__    396 GCTGAAAGAAGTGGACGATCCGGAGCGCTTCGGCATCGCCGAGATTGATG    445

BSNT_05791___    446 AGAAAAACAAGCGGAT----TCGTTCCATCATCGAAAAGCCCGAACAGCC    491
                     ||||||||||.|||||    |||    |||||.||||||||.||.|||||
RBAM_035090__    446 AGAAAAACAAACGGATCAAGTCG----ATCATTGAAAAGCCGGAGCAGCC    491

BSNT_05791___    492 ACCGACCAACCTTTGTGTTACCGGCATTTATATGTATGATGCAGAGGTGT    541
                     .|||||||..||.||.||.||.||.||.||.|||||.||.|||||.||||
RBAM_035090__    492 GCCGACCAGACTATGCGTCACAGGGATCTACATGTACGACGCAGAAGTGT    541

BSNT_05791___    542 TTTCATATATTGAACAAATATCACCATCAAAGCGCGGCGAGCTGGAAATC    591
                     ||||.||||||||||||||.||.||.|||||.||||||||.||||||||.
RBAM_035090__    542 TTTCTTATATTGAACAAATTTCCCCTTCAAAACGCGGCGAACTGGAAATT    591

BSNT_05791___    592 ACCGATGTGAATAATCTATACATCGAAAACAGCCAGCTTACGTATGATGT    641
                     ||.|||||.||||||.|||||||.|||.||||..||||.|||||||||||
RBAM_035090__    592 ACGGATGTCAATAATTTATACATTGAACACAGTGAGCTGACGTATGATGT    641

BSNT_05791___    642 GTTATCAGGCTGGTGGGTAGATGCCGGAACTCACGAATCGCTTTATCTCG    691
                     ||||.|.|||||||||||.|||||.||.||.||.||||||||.||.||||
RBAM_035090__    642 GTTAACGGGCTGGTGGGTGGATGCGGGTACGCATGAATCGCTCTACCTCG    691

BSNT_05791___    692 CTTCCCAG----CTTGTACACCAGGCTTTACGGAAAGGACAGGACGA--A    735
                         ||.|    ||.|..||.|||||.||||.||||||||||||..|  |
RBAM_035090__    692 ----CCGGAAGCCTGGCGCATCAGGCATTACAGAAAGGACAGGAGCATTA    737

BSNT_05791___    736 AAGTGA    741
                     |     
RBAM_035090__    738 A-----    738


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