Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05789 and RBAM_035070

See Amino acid alignment / Visit BSNT_05789 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:17
# Commandline: needle
#    -asequence dna-align/BSNT_05789___spsK.1.9828.seq
#    -bsequence dna-align/RBAM_035070___spsK.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05789___spsK-RBAM_035070___spsK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05789___spsK-RBAM_035070___spsK.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05789___spsK
# 2: RBAM_035070___spsK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 882
# Identity:     627/882 (71.1%)
# Similarity:   627/882 (71.1%)
# Gaps:          63/882 ( 7.1%)
# Score: 2138.0
# 
#
#=======================================

BSNT_05789___      1 TTGACAAAGGTATTGGTGACTGGGGCGGGAGGACAGCTTGGCTTGGAACT     50
                     |||||.||||||||.||.||.||.||||..||.|||||.||...|||..|
RBAM_035070__      1 TTGACGAAGGTATTAGTAACCGGAGCGGCCGGCCAGCTGGGGCGGGAGTT     50

BSNT_05789___     51 ATGCCGCCAGCTGAAGCAAGCCGGATATGAGGTCATTGCGTTAACAAAGA    100
                     ||||||||||||||||||.|..||.|||||.||.||.||.||.|||||..
RBAM_035070__     51 ATGCCGCCAGCTGAAGCAGGAAGGGTATGAAGTGATCGCCTTGACAAAAG    100

BSNT_05789___    101 AGATGATGAACATTGCTGACCAGCGCTCAGTACGGCATTCGTTTGGCCAT    150
                     .||||||||||||..|.||||||||.||.||.|||||.|||||..|||||
RBAM_035070__    101 CGATGATGAACATATCCGACCAGCGTTCGGTGCGGCACTCGTTCAGCCAT    150

BSNT_05789___    151 TATCAGCCGGATATCGTGGTCAATAGCGCCGCGTTTACGTCGGTTGATCA    200
                     ||..|||||||||||||.|||||||..||.||.|..||.||.|||||..|
RBAM_035070__    151 TACAAGCCGGATATCGTCGTCAATACGGCGGCATACACCTCCGTTGACAA    200

BSNT_05789___    201 ATGCGAGAAAGAGCTTGATAAAGCGTACTTGGTTAACGGAATCGGCGCTT    250
                     |||.||.|..|||||.||.||||||||.||..|.||||||||||||||||
RBAM_035070__    201 ATGTGAAACGGAGCTCGACAAAGCGTATTTAATAAACGGAATCGGCGCTT    250

BSNT_05789___    251 ATTATACAGCGCTTGAGTC----AACCCGCATCGGTGCTCAATATGTTCA    296
                     |||||.|.|||||||||.|    ||    ||.|||.||..|||...||||
RBAM_035070__    251 ATTATGCCGCGCTTGAGGCTGAAAA----CACCGGCGCGAAATTCATTCA    296

BSNT_05789___    297 TATCAGCACGGACTATGTATTCAATGGGAAAGGAACCCAGCCATATAGGG    346
                     .||||||||.||.||.||.||||..||.||||||||.|.||||||    .
RBAM_035070__    297 CATCAGCACCGATTACGTCTTCAGCGGCAAAGGAACACGGCCATA----C    342

BSNT_05789___    347 AAGAC----GATCCCCTCGATCCGAAAACCATTTATGGCAAAAGCAAAAG    392
                     .||||    ||||||...||||||...||.||||||||.||||||||||.
RBAM_035070__    343 CAGACCGATGATCCCGCAGATCCGGGCACAATTTATGGAAAAAGCAAAAA    392

BSNT_05789___    393 GCTTGGAGAAGAACTGATAAGATTAACGACAAAAGACAGCACGATCATCA    442
                     .||.||.|||||||||||..|.||.|||..||||.||..|||.||.||||
RBAM_035070__    393 ACTCGGCGAAGAACTGATCCGGTTGACGGGAAAAAACCACACCATTATCA    442

BSNT_05789___    443 GAACATCGTGGGTGTACGGACATGGCGGCAG---TAATTTCGTTGAAACC    489
                     ||||||||||||||||||| ||  |||||.|   .||.||.||..|.||.
RBAM_035070__    443 GAACATCGTGGGTGTACGG-CA--GCGGCGGGCACAACTTTGTCAATACG    489

BSNT_05789___    490 ATGCTGAAGTTTGCTGAAACGAAACAAG---AGCTTCGGGTTGTCAGCGA    536
                     |||||||||.||||.||.||   |||.|   ||.|.||.||.||.|.|||
RBAM_035070__    490 ATGCTGAAGCTTGCGGATAC---ACATGATCAGGTGCGTGTCGTTAACGA    536

BSNT_05789___    537 TCAAATTGGTTCGCCGACTTATACGAAGGATTTAGCAGAAGCGGTCATCA    586
                     ||||.|.||..|.|||||.|||||.||.||||||||.|||.||||.|||.
RBAM_035070__    537 TCAAGTCGGCGCACCGACGTATACAAAAGATTTAGCCGAAACGGTGATCG    586

BSNT_05789___    587 AGCTGTT---CAGCCATCCGCCGGGCATCTATCATGTCAGCAATTCA--G    631
                     ..|||||   |||   .|||||||||.|.||.||.| |.|||| .||  |
RBAM_035070__    587 GTCTGTTTGACAG---GCCGCCGGGCTTATACCACG-CCGCAA-ACAGCG    631

BSNT_05789___    632 GCATATGCAGCTGGTATGAGTTTGCGATGGCAATTATGGAAGAAAGCGGG    681
                     |..|.||||||||||||||.|||||.|.|||.|||.|.||||||||| ||
RBAM_035070__    632 GAGTGTGCAGCTGGTATGAATTTGCCAAGGCTATTTTTGAAGAAAGC-GG    680

BSNT_05789___    682 CTGGAAA---CAGCCATTTTGCCTGTAACGACAGAGGAATACGGGAACAA    728
                     |.|  ||   |.|||.|..||||.||.|||||.|||||||||||.||..|
RBAM_035070__    681 CAG--AACCGCCGCCGTGCTGCCCGTCACGACGGAGGAATACGGAAATGA    728

BSNT_05789___    729 AACGCCCCGTCCGGCATACTCTGTGCTGAGCCATCGGGCCATTGAAGAAG    778
                     .|||||.||.||.||.|||||.|||.||||.|.|..|.|.||||||    
RBAM_035070__    729 GACGCCGCGCCCCGCTTACTCGGTGTTGAGTCTTGAGTCGATTGAA----    774

BSNT_05789___    779 CCGGCA-----TCCGCCCCCGCCACTGGCGGGAAGCGTTACGAGAGTATT    823
                      |||||     ||.||....|.||.||||||||||||.|.|..||.||||
RBAM_035070__    775 -CGGCAGGGGCTCGGCATGAGGCATTGGCGGGAAGCGCTGCATGATTATT    823

BSNT_05789___    824 TGCAGGAAAGGAG---CAGTACGTGTGATTGA    852
                     |.||  ||.||||   ||||.|..||||    
RBAM_035070__    824 TACA--AAGGGAGGGACAGTGCAAGTGA----    849


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05789 and RBAM_035070

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
