Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_00454 and RBAM_035000
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Amino acid alignment /
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:22:12
# Commandline: needle
# -asequence dna-align/BSNT_00454.1.9828.seq
# -bsequence dna-align/RBAM_035000.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_00454-RBAM_035000.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_00454-RBAM_035000.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_00454
# 2: RBAM_035000
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1103
# Identity: 570/1103 (51.7%)
# Similarity: 570/1103 (51.7%)
# Gaps: 334/1103 (30.3%)
# Score: 1226.0
#
#
#=======================================
BSNT_00454 1 ---------------------------ATGACAGTGCTATGGGTGGCCGC 23
|| .||||.| ||.||
RBAM_035000 1 TTGTTTTATATGTTGGTTATTTTATTCAT----ATGCTCT-----GCAGC 41
BSNT_00454 24 TGT---CATCGCTCTGGCGTGTCTGAA-------------------TGTG 51
.|| .||...||| |.||.||| ||.|
RBAM_035000 42 AGTAAATATATTTCT----TTTCCGAAGCCGATTAAATCTAAGGACTGAG 87
BSNT_00454 52 ATTCAATTCATAATGAAAAA------GAAGCGGGACGGGAATCTGGCTTA 95
|||.|||..|||| ||||.| ||| ||..|| |||
RBAM_035000 88 ATTAAATATATAA-GAAATAAACTTCGAA----------AAGTTG--TTA 124
BSNT_00454 96 CACGGCTGACCAGCTTAGCTACATGCTCAGCCGGGATTCGGCAGGACAAG 145
.||| ||..|||.|| || |||
RBAM_035000 125 -----ATGA-------AGAGACAGGC------------------GA-AAG 143
BSNT_00454 146 --TTTTGCTTCCTACAGACGAT---CATACGCTCAAAGGCTTGCTTGTTA 190
|.||||||...||.||.||| .||| |.||| |.|||||||
RBAM_035000 144 ATTATTGCTTAACACGGAAGATAAATATA---TAAAA----TCCTTGTTA 186
BSNT_00454 191 ACATCAATCTTA-----TCGTTGAGA--ATCGTCAGCAGATCA------- 226
| .|||| .|| ||.||.||| ||..|||..||||||
RBAM_035000 187 A-TTCAA--ATAAACCGTCTTTTAGACCATAATCAAAAGATCAAAGGGAA 233
BSNT_00454 227 --GCGCCCAAT----TTGCCAAAACAGAGCAATCCATG----AAGCGGAT 266
| |||| ||| |||.| |||||| || ||
RBAM_035000 234 CTG----CAATAGTATTG----AACTG-----TCCATGCGAAAA----AT 266
BSNT_00454 267 GCTGACCAATATGTCGCACGACCTGAAAACGCCGTTAACAGTCATTCTTG 316
|.|..|.|||||.||.|||||..|.||.|||||.||||||||.||.||.|
RBAM_035000 267 GTTATCAAATATTTCACACGATTTAAAGACGCCTTTAACAGTTATACTAG 316
BSNT_00454 317 GTTATATCGAAGCGATTCAAAGTGATCCGA-ACATGCCGGACGAAGAGCG 365
|||||||.||| |||..||.|.| ||| |.|.|.|.||| ..||
RBAM_035000 317 GTTATATTGAA---ATTATAAATAA--CGATAAAAGTCTGAC----TTCG 357
BSNT_00454 366 GGAAAGATTGCTGGAGAAG----CTCCGCCAGAAAACA---AAT----GA 404
|.||||.|| |..|| || .|||||| ||| .|
RBAM_035000 358 GAAAAGGTT-----ATGAGTTTACT------AAAAACAGTTAATTTAAAA 396
BSNT_00454 405 AC--TC-----ATTCA--GATGATCAACTCCTTTTTTGATTTAGCGAAAT 445
|| || ||| | |.|.||.|||...||||||||..|.|..||||
RBAM_035000 397 ACGGTCGAGGTATT-AGCGTTAATAAACCGTTTTTTTGAACTTGTAAAAT 445
BSNT_00454 446 TAGAATCTGAAGATAAAGAGATCCCGATCACCAAAGTACAT-----ATGA 490
||||.||.|.||||||| |||.||.|| |.||
RBAM_035000 446 TAGAGTCAGGAGATAAA---------------AAATTAAATTCTTCACGA 480
BSNT_00454 491 A-TGACATATG------CAAACGAAATATCCTGCACT-----ATTATGAC 528
| ||||||||| ||..|||||.|| |.| ||||..||
RBAM_035000 481 ATTGACATATGTGAAGTCAGCCGAAAAAT-----AATTTTGGATTACTAC 525
BSNT_00454 529 G--CTGTTCAGTCA--AAAGGCTTTCAAGCAGCCATCGATAT-CCCG--G 571
| .| ||.|.|.| ||||..|||.|||.||..||.||||| |||| |
RBAM_035000 526 GAAAT-TTTAATTAGCAAAGAATTTGAAGTAGTGATTGATATACCCGATG 574
BSNT_00454 572 ATAC-GCCGGTGTATGCGCAGGCGAATGAAGAGGCTCTGGACAGAATCCT 620
||.| |.|..|||..|||.|| |||||||.||..|.||.||..|.||
RBAM_035000 575 ATTCTGTCTTTGTTAGCGGAG----ATGAAGATGCAATTGAGAGGGTTCT 620
BSNT_00454 621 GCAAAACCTATTGTCCAATGCGATTCAATATGGCGCGGCCGGCAAG---- 666
|.|.||..||.|..|.|||||.|||||||||||..|.|..||.|||
RBAM_035000 621 GAATAATTTAATTACGAATGCAATTCAATATGGTTCCGATGGTAAGATGG 670
BSNT_00454 667 -----TTA---ATCGG----GCTGACGCTGTCTTATGATG-------AGA 697
||| |||.| .|||| |.|||||| |||
RBAM_035000 671 TGGGTTTAAAGATCAGAATAACTGA-------TAATGATGTTTTTGTAGA 713
BSNT_00454 698 GGAACATCGCCATCACCGTATGGGATCGCGGAAAAGGGATTAGTGAAACC 747
|| |||..|||...||||||||.||.|.|||||..
RBAM_035000 714 --AA--------------TATCAGATAAAGGAAAAGGAATAAATGAAATG 747
BSNT_00454 748 GATCAGCAGCGGGTGTTTGAGAGGCTGTACACACTTGAAGAATCCAGAAA 797
.||.|..|.||.||.|||||..|..||||||||.|.|||||.||.|||||
RBAM_035000 748 CATAAAGACCGTGTCTTTGAACGAATGTACACATTGGAAGACTCGAGAAA 797
BSNT_00454 798 TAAAGC--ATT-TCAAGGAAGCGGCCTGGGTTTAACCATCACAAAACG-G 843
|| | ||| |||.||||||||..||||..|.||.||.||.|| | |
RBAM_035000 798 TA---CCAATTATCAGGGAAGCGGATTGGGGCTGACGATTACTAA--GAG 842
BSNT_00454 844 CTTA-CAGAAAAAATGGGAGGCACG-ATATCCGTCCAAAGCAAGCCGTAC 891
.||| .|||..|||||||||| |.| |||||..|..|.|||..|||.|..
RBAM_035000 843 ATTAGTAGAGCAAATGGGAGG-AGGTATATCTTTAGATAGCGTGCCATTT 891
BSNT_00454 892 GAACGGACTGCATTTACGATCACATTG--------AAACGCATGACATAT 933
|||...||...||||.| || |||||.||.|..|..
RBAM_035000 892 GAAAAAACAATATTTTC--------TGTGCGTCTAAAACGTATTAGGTTC 933
BSNT_00454 934 TAA 936
|||
RBAM_035000 934 TAA 936
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