Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05778 and RBAM_034960
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:17
# Commandline: needle
# -asequence dna-align/BSNT_05778___rocC.1.9828.seq
# -bsequence dna-align/RBAM_034960___rocC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05778___rocC-RBAM_034960___rocC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05778___rocC-RBAM_034960___rocC.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05778___rocC
# 2: RBAM_034960___rocC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1452
# Identity: 1051/1452 (72.4%)
# Similarity: 1051/1452 (72.4%)
# Gaps: 69/1452 ( 4.8%)
# Score: 3781.5
#
#
#=======================================
BSNT_05778___ 1 ATGATGCAG---------AATCATAAAAATGAATTGCAGCGCAGCATGAA 41
|||||| |||| |||.||||||||||||||..|||||
RBAM_034960__ 1 ---ATGCAGGGAGATACCAATC---AAACTGAATTGCAGCGCACGATGAA 44
BSNT_05778___ 42 AAGCAGGCATTTGTTTATGATTGCTTTGGGAGGGGTGATTGGCACTGGGC 91
..||.||||||||||||||||.||..|.||.||.|||||.||.||.||||
RBAM_034960__ 45 GGGCCGGCATTTGTTTATGATCGCCCTCGGCGGCGTGATCGGGACGGGGC 94
BSNT_05778___ 92 TGTTTCTAGGCTCTGGCTTTACCATTAGCCAGGCGGGACCGCTCGGCGC- 140
|.|||||.|||||.||.|||||.||.||..|.|||||||||.|||||||
RBAM_034960__ 95 TTTTTCTGGGCTCCGGTTTTACGATCAGTGAAGCGGGACCGATCGGCGCG 144
BSNT_05778___ 141 -CATTGCCGCGTATATCATCGGCGGATTTTTAATGTATCTCGTCATGCTT 189
.|||| ||.|||.|.|||||||||||||||||||||||.||.||||||
RBAM_034960__ 145 ATATTG--GCTTATGTGATCGGCGGATTTTTAATGTATCTGGTGATGCTT 192
BSNT_05778___ 190 TGTTTAGGAGAATTGGCTGTTGCCATGCCGGTGGCCGGATCGTTTCAGGC 239
|||||.||.||..|.||.||.|||||||||||.||.|||||.|||||.||
RBAM_034960__ 193 TGTTTGGGGGAGCTCGCGGTCGCCATGCCGGTCGCAGGATCATTTCAAGC 242
BSNT_05778___ 240 CTACGCCACTAAATTTCTGGGACCGTCGACAGGCTTTATGATTGGCTGGC 289
.||.|||.|.||.|||||.||.||||||||.||.||||.|||.||.|||.
RBAM_034960__ 243 GTATGCCGCAAAGTTTCTCGGGCCGTCGACGGGTTTTACGATCGGATGGA 292
BSNT_05778___ 290 TGTATTGGTTCAGCTGGGCGAATACAGTGGGGTTAGAGCTGACGTCAGCA 339
||||....|||||||||||.||||||||||||.|.||.||||||||.||.
RBAM_034960__ 293 TGTACGCATTCAGCTGGGCCAATACAGTGGGGCTTGAACTGACGTCGGCG 342
BSNT_05778___ 340 GGCATTTTGATGCAAAGGTGGCTGCCCTCCGTTCCGATCTGGATATGGTG 389
||.|||||.|||||..|||||.|.||..||||||||||.|||.|.|||||
RBAM_034960__ 343 GGGATTTTAATGCAGCGGTGGTTTCCGGCCGTTCCGATTTGGGTGTGGTG 392
BSNT_05778___ 390 CCTCGTGTTCGGCATCGTCATCTTTTTGATTAATGCGCTCTCTGTCAGAA 439
|||.||.||||||.|||||||.||||..|||||.|||||.||||...|.|
RBAM_034960__ 393 CCTTGTATTCGGCGTCGTCATTTTTTCCATTAACGCGCTGTCTGCGCGGA 442
BSNT_05778___ 440 GCTTTGCAGAAATGGAATTTTGGTTTTCAAGCATCAAAGTGGCGGCGATC 489
|.|||||.||||||||||||||||||||.|||||.||.||...|||.||.
RBAM_034960__ 443 GTTTTGCGGAAATGGAATTTTGGTTTTCCAGCATTAAGGTCATGGCCATT 492
BSNT_05778___ 490 ATATTATTTATTGTGATTGGCGGAGCCGCTGTGTTTGGCTTGATTGACTT 539
.||||.||||||.|..|.|||.|.||.||.||.||.|||||..|.|..||
RBAM_034960__ 493 GTATTGTTTATTATTCTCGGCTGCGCTGCGGTATTCGGCTTTGTCGGTTT 542
BSNT_05778___ 540 TAAAGGCGGACAGGAGACACCCTTTTTGTCTAACTTTATGACTGATAGAG 589
|||.|||||.|||..|.|.||.|.|.||||.|||||||.|||.||.|.||
RBAM_034960__ 543 TAACGGCGGGCAGACGGCTCCGTATCTGTCAAACTTTACGACGGACAAAG 592
BSNT_05778___ 590 GACTTTTCCCTAATGGGGTGCTGGCCGTTATGTTTACGCTGGTCATGGTG 639
|.||||||||.||.||.|..|..|||||..|||||||.||.|||||||||
RBAM_034960__ 593 GGCTTTTCCCGAACGGTGCCCAAGCCGTGCTGTTTACCCTTGTCATGGTG 642
BSNT_05778___ 640 AACTTCTCGTTCCAGGGAACGGAGCTTGTCGGCATTGCGGCAGGGGAAAG 689
||.||.||.||||||||.||.|||||.|||||.||.||..|.||.|||||
RBAM_034960__ 643 AATTTTTCATTCCAGGGCACCGAGCTGGTCGGAATCGCCTCGGGAGAAAG 692
BSNT_05778___ 690 TGAAAGCCCGGAAAAAACACTGCCAAAGTCCATTCGAAATGTCATTTGGC 739
.||||..||||||||.||.||.||....||.||.|||||.|||||.||||
RBAM_034960__ 693 CGAAAATCCGGAAAAGACGCTTCCCCGCTCAATCCGAAACGTCATATGGC 742
BSNT_05778___ 740 GTACGCTGTTTTTCTTTGTGCTCGCTATGTTCGTCTTGGTTGCCATCCTT 789
|.||||||||||||||.|||||.||.|||||.||..|.||..||||..|.
RBAM_034960__ 743 GGACGCTGTTTTTCTTCGTGCTGGCGATGTTTGTTCTCGTGTCCATTTTG 792
BSNT_05778___ 790 CCGTACAAAACGGCGGGGGTGATTGAAAGCCCATTTGTAGCGGTACTCGA 839
||||||.|||||||.||.||.||.||||||||.|||||.||.||.||.||
RBAM_034960__ 793 CCGTACCAAACGGCAGGCGTCATCGAAAGCCCGTTTGTGGCTGTGCTGGA 842
BSNT_05778___ 840 TCAAATCGGCATCCCATTTTCGGCAGATATCATGAATTTTGTCATCTTAA 889
|.||||||||.|.||.|.|.||||.|||||||||||.||||||||..|.|
RBAM_034960__ 843 TAAAATCGGCGTTCCCTATGCGGCTGATATCATGAACTTTGTCATTCTGA 892
BSNT_05778___ 890 CAGCCATTTTATCTGTTGCTAATTCGGGGTTGTATGCGGCGTCGCGTATG 939
|.|||||..|.||.||.||.|||||.|||.||||.||..||||..|.|||
RBAM_034960__ 893 CCGCCATGCTGTCGGTGGCGAATTCCGGGCTGTACGCTTCGTCCAGAATG 942
BSNT_05778___ 940 ATGTGGTCACTTTCATCAAATCAAATGGGTC---CATCCTTTCTCACCAG 986
||||||||.||.|||..||.|.|.|||||.| |.|||| |.||.|.
RBAM_034960__ 943 ATGTGGTCCCTATCAAAAACTAAGATGGGCCCCGCTTCCT---TAACGAA 989
BSNT_05778___ 987 ACTGACAAAAAAAGGCGTGCCGATGAATGCCCTGCTGATTACGCTAGGCA 1036
||||||.||||||||||||||..||||.||.||....||.||..|.|.||
RBAM_034960__ 990 ACTGACGAAAAAAGGCGTGCCTCTGAAAGCTCTTTCCATCACCATCGCCA 1039
BSNT_05778___ 1037 TTTCAGGCTGTTCGCTGCTGACAAGTGTCATGGCCGCAGAAACAGTGTAT 1086
|.||.||.|..||.||||||||||||||..|.||.||.|||||.||||||
RBAM_034960__ 1040 TCTCCGGTTTATCCCTGCTGACAAGTGTATTCGCGGCTGAAACGGTGTAT 1089
BSNT_05778___ 1087 TTATGGTGTATCTCAATCTCGGGCATGGTGACAGTTGTCGCGTGGATGTC 1136
.|.|||...||.||.|||||.||.|||.|.||.||.||||||||||||||
RBAM_034960__ 1090 GTGTGGCTCATTTCCATCTCCGGTATGATTACCGTCGTCGCGTGGATGTC 1139
BSNT_05778___ 1137 CATTTGTGCGTCGCAATTTTTCTTTCGCAGACGTTTCCTTGCTGAAGGCG 1186
.||.||.||.||.|||||..|.||.||.|||||.||.||.||||||||.|
RBAM_034960__ 1140 AATCTGCGCTTCACAATTCGTTTTCCGGAGACGCTTTCTCGCTGAAGGAG 1189
BSNT_05778___ 1187 GAAATGTGAATGATCTGGAGTTCAGAACGCCGCTTTATCCGCTAGTCCCG 1236
|||||.||||.||.||||..||.|.||||||.|||||||||.|.||.|||
RBAM_034960__ 1190 GAAATCTGAAAGACCTGGCATTTAAAACGCCTCTTTATCCGATCGTGCCG 1239
BSNT_05778___ 1237 ATTCTCGGATTTT--GTTTATATGGCTGCG------TGTTGATCAGCCTT 1278
||||||||||||| ||||| || |.||||||||.||.
RBAM_034960__ 1240 ATTCTCGGATTTTCGGTTTA--------CGGTCTTATCTTGATCAGTCTC 1281
BSNT_05778___ 1279 ATTTTCATTCCGGATCAAAGAATTGGCTTATACTGCGGTGTGCCGATCAT 1328
||.||.||.||.||.||..|.||.||..|.||||||||.||.|||.|.||
RBAM_034960__ 1282 ATCTTTATCCCCGACCAGCGTATCGGTCTGTACTGCGGCGTCCCGCTGAT 1331
BSNT_05778___ 1329 TATTTTCTGTTATGCATACTATCATCTAAGCATCAAAAAGCGTATAAATC 1378
.||..|.|||||.||.||.|||||..|..|.||||||||.||..|.||.|
RBAM_034960__ 1332 GATCATTTGTTACGCGTATTATCACTTCGGTATCAAAAAACGCCTGAAGC 1381
BSNT_05778___ 1379 ATGAACCGATT------GAAAAAAAGCAGACAGAGGCGC--------AAT 1414
.|||.|||..| ||||| |||||| ||
RBAM_034960__ 1382 GTGAGCCGGCTTCTTCGGAAAA-----------AGGCGCTGCCGGATAA- 1419
BSNT_05778___ 1415 AG 1416
RBAM_034960__ 1419 -- 1419
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