Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05773 and RBAM_034910

See Amino acid alignment / Visit BSNT_05773 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:16
# Commandline: needle
#    -asequence dna-align/BSNT_05773___ywfD.1.9828.seq
#    -bsequence dna-align/RBAM_034910___bacC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05773___ywfD-RBAM_034910___bacC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05773___ywfD-RBAM_034910___bacC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05773___ywfD
# 2: RBAM_034910___bacC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 786
# Identity:     633/786 (80.5%)
# Similarity:   633/786 (80.5%)
# Gaps:          42/786 ( 5.3%)
# Score: 2608.0
# 
#
#=======================================

BSNT_05773___      1 ATGATCATGAACCTCACCGATAAAACCGTCCTCATCACAGGAGGCGCATC     50
                           ||||||||.||.|||||||||||||||||||||||.||||||||
RBAM_034910__      1 ------ATGAACCTGACGGATAAAACCGTCCTCATCACAGGGGGCGCATC     44

BSNT_05773___     51 AGGCATTGGTTATGCTGCGGTTCAGGCTTTTTTGGGCCAGCAGGCCAATG    100
                     ||||||.||||||||.|||||||||||.|||.||...||||||||.||||
RBAM_034910__     45 AGGCATCGGTTATGCCGCGGTTCAGGCGTTTCTGAATCAGCAGGCGAATG     94

BSNT_05773___    101 TGGTTGTGGCGGATATTGATGAAGCGCAAGGAGAAGCAATGGTACGAAAA    150
                     ||||.||.||||||||||||||.|||||.||||||||.|||.|..|.|||
RBAM_034910__     95 TGGTCGTCGCGGATATTGATGAGGCGCAGGGAGAAGCGATGATCAGGAAA    144

BSNT_05773___    151 GAAAATAATGACAGGCTGCACTTTGTGCAAACGGACATCACAGACGAAGC    200
                     |||||.||||||||||||||.||||||||.|||||.||.|||||.||..|
RBAM_034910__    145 GAAAACAATGACAGGCTGCATTTTGTGCAGACGGATATTACAGATGAGCC    194

BSNT_05773___    201 TGCCTGCCAGCACG---------CAGTTGAATCGGCGGTTCATACA--TT    239
                     .||.||.||..|||         |||      ||||||     |||  ||
RBAM_034910__    195 GGCATGTCAAAACGCCATCCGGTCAG------CGGCGG-----ACAAGTT    233

BSNT_05773___    240 TGGCGGGCTCGATGTCTTGATTAATAATGCAGGCATCGAAATCGTGGCGC    289
                     .|||||..|.||.||.||.||.|||||.||.|||||||||||.||.||.|
RBAM_034910__    234 CGGCGGATTGGACGTGTTAATCAATAACGCCGGCATCGAAATTGTCGCCC    283

BSNT_05773___    290 CTATTCACGAGATGGAGCTCAGCGATTGGAACAAGGTGCTGCAA-GTCAA    338
                     |.|||||.|||||||||||.|||||||||||||||||||| ||| |||||
RBAM_034910__    284 CGATTCATGAGATGGAGCTGAGCGATTGGAACAAGGTGCT-CAACGTCAA    332

BSNT_05773___    339 TTTGACCGGCATGTTTTTAATGAGCAAACATGCACTCAAGCATATGCTGG    388
                     |.||||.|||||||||.|.||||||||.||.||.||||||.|||||||  
RBAM_034910__    333 TCTGACGGGCATGTTTCTTATGAGCAAGCACGCGCTCAAGTATATGCT--    380

BSNT_05773___    389 CCGC-----CGGCAAGGGCAACATCATTAATACGTGCTCTGTCGGCGGAC    433
                        |     ||||||||||||.||||||||.||||||||.|||||.|||.
RBAM_034910__    381 ---CAAAAGCGGCAAGGGCAATATCATTAACACGTGCTCCGTCGGAGGAG    427

BSNT_05773___    434 TCGTGGCATGGCCTGATATTCCTGCTTATAACGCCAGCAAAGGCGGGGTT    483
                     ||||.||||||||.||.|||||.||.|||||||||...||||||||.||.
RBAM_034910__    428 TCGTTGCATGGCCCGACATTCCCGCATATAACGCCTCTAAAGGCGGCGTA    477

BSNT_05773___    484 TTGCAGCTGACTAAATCAATGGCCGTTGATTATGCGAAACATCAA-ATTC    532
                     |||||||||||....||.||||||||.|||||.||.||||| ||| ||.|
RBAM_034910__    478 TTGCAGCTGACGCGTTCGATGGCCGTCGATTACGCCAAACA-CAACATCC    526

BSNT_05773___    533 GGGTGAACTGCGTATGCCCGGGGATCATCGACACACCGCTGAATGAAAAA    582
                     |.||.||.|||||.||||||||.|||||.||||||||..||||||||||.
RBAM_034910__    527 GCGTCAATTGCGTGTGCCCGGGAATCATTGACACACCTTTGAATGAAAAG    576

BSNT_05773___    583 TCATTCCTTGAAAATAATGAAGGCACACTTGAAGAGATTAAAAAAGAAAA    632
                     ||.|||||||||||.||.||||||||.||||||||.||.|||||||||||
RBAM_034910__    577 TCGTTCCTTGAAAACAACGAAGGCACGCTTGAAGAAATCAAAAAAGAAAA    626

BSNT_05773___    633 GGCGAAGGTAAATCCGCTGCTGAGGCTTGGGAAACCTGAAGAAATCGCAA    682
                     .|||||.||.||||||||||||||.||.||.||.|||||||||||.||.|
RBAM_034910__    627 AGCGAAAGTCAATCCGCTGCTGAGACTCGGCAAGCCTGAAGAAATAGCGA    676

BSNT_05773___    683 ACGTGATGCTGTTTTTAGCCTCGGATTTATCAAGCTATATGACCGGAAGC    732
                     ||||.|||||||||.|.||.||||||||||||||||||||||||||||||
RBAM_034910__    677 ACGTCATGCTGTTTCTCGCGTCGGATTTATCAAGCTATATGACCGGAAGC    726

BSNT_05773___    733 GCCATCACCGCAGACGGAGGATACACCGCACAATAG    768
                     ||.||||||||||||||.||||||||||||||||||
RBAM_034910__    727 GCGATCACCGCAGACGGTGGATACACCGCACAATAG    762


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