Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05767 and RBAM_034870

See Amino acid alignment / Visit BSNT_05767 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:16
# Commandline: needle
#    -asequence dna-align/BSNT_05767___ywfH.1.9828.seq
#    -bsequence dna-align/RBAM_034870___ywfH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05767___ywfH-RBAM_034870___ywfH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05767___ywfH-RBAM_034870___ywfH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05767___ywfH
# 2: RBAM_034870___ywfH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 783
# Identity:     623/783 (79.6%)
# Similarity:   623/783 (79.6%)
# Gaps:           6/783 ( 0.8%)
# Score: 2458.0
# 
#
#=======================================

BSNT_05767___      1 TTGTCAAAACGAACCGCATTTGTTATGGGAGCCAGTCAAGGGATTGGGAA     50
                     |||||||||||||||||.|||.||||||||||||||||.|||||.||.||
RBAM_034870__      1 TTGTCAAAACGAACCGCGTTTATTATGGGAGCCAGTCAGGGGATCGGCAA     50

BSNT_05767___     51 AGCAATCGCTCTGAAATTAGCAGACCAGCACTTTTCCCT--CGTCATTAA     98
                     |||.||||||||||||.|.||.|||.|...||||  |.|  |||||||||
RBAM_034870__     51 AGCGATCGCTCTGAAACTGGCGGACAATGGCTTT--CATACCGTCATTAA     98

BSNT_05767___     99 TTCGCGAAATTTGGATAATATTGAATCTGTCAAAGAAGACATTTTTGCCA    148
                     |||.|||..|...||.|||||.|||||.||.||||||||.||..|.||||
RBAM_034870__     99 TTCACGAGTTCCCGAAAATATCGAATCGGTAAAAGAAGAGATCCTCGCCA    148

BSNT_05767___    149 AGCATCCTGAGGCGAGCGTCATTGTCCTTGCGGGGGATATGTCTGACCGG    198
                     |.|||||.||.|||.||||||.|||.||.||.|||||||||||.||||.|
RBAM_034870__    149 AACATCCGGATGCGGGCGTCACTGTTCTGGCCGGGGATATGTCGGACCAG    198

BSNT_05767___    199 CATACGAGAGCGGGCATTTTTCAGGAAATCGAATCTCAATGCGGACGGCT    248
                     .|.||.|||||.|||||||||.|.||.|||..|||.||||||||||||||
RBAM_034870__    199 AAGACAAGAGCCGGCATTTTTGAAGAGATCAGATCACAATGCGGACGGCT    248

BSNT_05767___    249 TGATGTTCTGATTAATAATATCCCGGGCGGCGCGCCTGATACATTTGATA    298
                     ||||||..||||.||.||.||.|||||||||.||||.|||||.|||||.|
RBAM_034870__    249 TGATGTATTGATCAACAACATTCCGGGCGGCTCGCCGGATACCTTTGAAA    298

BSNT_05767___    299 ACTGCAATATAGACGATATGACGGCCACGTTCACTCAAAAGACCGTTGCC    348
                     ||||..|||||||.||||||||....||.||.||..|.||.||..|.|||
RBAM_034870__    299 ACTGTGATATAGAGGATATGACAAATACCTTTACGAATAAAACGATCGCC    348

BSNT_05767___    349 TATATTGACGCTAT-CAAGCGTGCTTCCTCACTGATGAAACAAAACGAGT    397
                     |||||.|||.|||| .||.|| ||..|..||.|.||||||||..||||.|
RBAM_034870__    349 TATATCGACTCTATGAAAACG-GCCGCAGCAATCATGAAACAGCACGAAT    397

BSNT_05767___    398 TTGGCAGAATCATCAACATTGTCGGAAATCTGTGGAAAGAACCCGGCGCC    447
                     |.|||||||||||.||.||.||||||||.||.||||||||||||||||||
RBAM_034870__    398 TCGGCAGAATCATTAATATCGTCGGAAACCTATGGAAAGAACCCGGCGCC    447

BSNT_05767___    448 AACATGTTCACAAACAGTATGATGAATGCCGCTTTAATTAACGCCAGTAA    497
                     ||.|||||.||.|||||.||||||||.||||||||||||||.|||||.||
RBAM_034870__    448 AATATGTTTACCAACAGCATGATGAACGCCGCTTTAATTAATGCCAGCAA    497

BSNT_05767___    498 AAATATTTCCATCCAGCTTGCTCCTCACAACATTACTGTCAACTGTCTGA    547
                     |||.||..||||.||||||||.|||....|||||||||||||||||||||
RBAM_034870__    498 AAACATCGCCATTCAGCTTGCGCCTTTTCACATTACTGTCAACTGTCTGA    547

BSNT_05767___    548 ATCCTGGTTTTATCGCTACAGACCGTTATCATCAATTTGTGGAAAATGTG    597
                     ||||.||.||||||||.||||||||||||||.|||||.|||.|.|||||.
RBAM_034870__    548 ATCCCGGGTTTATCGCCACAGACCGTTATCACCAATTCGTGAAGAATGTC    597

BSNT_05767___    598 ATGAAAAAGAACAGCATATCCAAACAGAAAGCAGAGGAACAGGTCGCTTC    647
                     |||||..|.|||.||||.||.|||..|.||||.||.||||.|.|.||.||
RBAM_034870__    598 ATGAAGCAAAACGGCATTTCTAAAGCGGAAGCGGAAGAACGGATTGCCTC    647

BSNT_05767___    648 CGGGATTCCGATGAAACGGGTCGGATCAGCCGAAGAAACCGCAGCGCTCG    697
                     .||..|.||||||||.||.||||||.|.||.|||||||||||.|||||.|
RBAM_034870__    648 AGGCGTCCCGATGAAGCGTGTCGGAACTGCGGAAGAAACCGCGGCGCTGG    697

BSNT_05767___    698 CCGCGTTTCTTGCCTCTGAGGAAGCCTCCTACATCACGGGACAGCAAATT    747
                     |.||.||||||||||||||.|||||.|||||.||.||.|||||||||.|.
RBAM_034870__    698 CTGCCTTTCTTGCCTCTGAAGAAGCTTCCTATATTACCGGACAGCAAGTG    747

BSNT_05767___    748 TCCGCTGACGGCGGCAGCATGAAAAGCATATAA    780
                     ||.||.|||||||||||||||||||||||||||
RBAM_034870__    748 TCAGCCGACGGCGGCAGCATGAAAAGCATATAA    780


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05767 and RBAM_034870

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
