Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05742 and RBAM_034680
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:15
# Commandline: needle
# -asequence dna-align/BSNT_05742___ywhA.1.9828.seq
# -bsequence dna-align/RBAM_034680___ywhA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05742___ywhA-RBAM_034680___ywhA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05742___ywhA-RBAM_034680___ywhA.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05742___ywhA
# 2: RBAM_034680___ywhA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 451
# Identity: 303/451 (67.2%)
# Similarity: 303/451 (67.2%)
# Gaps: 62/451 (13.7%)
# Score: 1012.5
#
#
#=======================================
BSNT_05742___ 1 ATGGACCATGACAAACTGGAAGCAAATTTGCTGGATCACGCACTTACAAA 50
|||.|.||.||.|.|.|..||||||||.|.||||||.||||.||.||.||
RBAM_034680__ 1 ATGAAGCACGATATATTACAAGCAAATGTACTGGATTACGCGCTCACGAA 50
BSNT_05742___ 51 ATATTTGAAAAGCACGAAGCAATTAGATGAAGCCACCGTTCCGAAACACG 100
||||||.||.||||||||..|..|.|||||.||.||..||||||| |
RBAM_034680__ 51 ATATTTAAAGAGCACGAAAAAGCTTGATGAGGCGACAATTCCGAA----G 96
BSNT_05742___ 101 ----TGAATAATGTAAGAGGGTTTATTCTGCGGATCATATACAGACATGG 146
|.||.|||.|.|||||.||||||||..||||.||.|||.|.||.||
RBAM_034680__ 97 AGTATAAACAATATCAGAGGATTTATTCTCAGGATTATTTACCGGCACGG 146
BSNT_05742___ 147 GAGCTGCACCATAAAGGATATTTTGAAGGAGGTCACACTGTCTCCCTCTG 196
.|..|||||.||.||.|||||.|||.||||.||||||.|.||.||.||.|
RBAM_034680__ 147 CACGTGCACGATTAAAGATATATTGCAGGAAGTCACATTATCGCCTTCAG 196
BSNT_05742___ 197 CCACGACCACAGCTCTGAATCATTTAGAGCAGGAAGGGTTT-ATTGAGAG 245
|||||||.||.|||||||||||||||||..|.| ||||||| .|.||.||
RBAM_034680__ 197 CCACGACAACCGCTCTGAATCATTTAGAAAAAG-AGGGTTTCGTGGAAAG 245
BSNT_05742___ 246 ATCCAGAAATAACAATGACCGCCGCACTGTATGGATTACGCTTTCTGAAT 295
.||.|||||||||.|.|||||.|||||.||||||||.||||||||.||||
RBAM_034680__ 246 GTCGAGAAATAACGAAGACCGACGCACGGTATGGATGACGCTTTCCGAAT 295
BSNT_05742___ 296 CGGGCCGGGGA------GCGGC--TGAACAAATGATCGAAAACCGCCAGC 337
| |||| ||||| || ||||||||.||||||||.|||.
RBAM_034680__ 296 C------GGGAAAAATGGCGGCCATG--CAAATGATTGAAAACCGGCAGA 337
BSNT_05742___ 338 AGCTGATTGACG-GCATGTTTGAACGTTTAACAGCCGAAGAGAAAG-AGA 385
.|||.||||||| || ||||.|||...||.||.|..||||| |||| |.|
RBAM_034680__ 338 TGCTCATTGACGAGC-TGTTCGAAGCATTGACTGAAGAAGA-AAAGAATA 385
BSNT_05742___ 386 CGTTCTTGGCGATTATTGCGAAGCTGGCTC-----AATAG---------- 420
|.||.|| |.|.||| ||.||
RBAM_034680__ 386 CCTTTTT----------------CAGCCTCGTTGAAAAAGTAATGAAATA 419
BSNT_05742___ 420 - 420
RBAM_034680__ 420 A 420
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