Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05677 and RBAM_034320
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:10
# Commandline: needle
# -asequence dna-align/BSNT_05677___rpoE.1.9828.seq
# -bsequence dna-align/RBAM_034320___rpoE.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05677___rpoE-RBAM_034320___rpoE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05677___rpoE-RBAM_034320___rpoE.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05677___rpoE
# 2: RBAM_034320___rpoE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 530
# Identity: 414/530 (78.1%)
# Similarity: 414/530 (78.1%)
# Gaps: 25/530 ( 4.7%)
# Score: 1648.5
#
#
#=======================================
BSNT_05677___ 1 TTGGGTATCAAACAATATTCACAGGAAGAGCTAAAGGAAATGGCTTTAGT 50
|||.||||||||||||||||.||||||.||||.|||.|.|||||||||||
RBAM_034320__ 1 TTGAGTATCAAACAATATTCTCAGGAACAGCTGAAGCAGATGGCTTTAGT 50
BSNT_05677___ 51 TGAAATCGCTCACGAATTATTTGAAGAACATAAAAAACCAGTTCCTTTTC 100
||||||||||||||||.|.||...|||||||||||||||.|||||.||.|
RBAM_034320__ 51 TGAAATCGCTCACGAAATTTTCTCAGAACATAAAAAACCGGTTCCGTTCC 100
BSNT_05677___ 101 AGGAGCTTTTAAATGAAATCGCATCT--TTGCTCGGCGTGAAAAAAGAAG 148
|||||||..|.|||||||| .|||| ||||||||.||.|..|||||.|
RBAM_034320__ 101 AGGAGCTGCTGAATGAAAT--GATCTCCTTGCTCGGTGTTACGAAAGAGG 148
BSNT_05677___ 149 AGCTTGGAGACCGCATCGCTCAATTTTATACAGATTTAAACATTGACGGC 198
|..|.||.|||||.|||||.||||||||||||||..|.||||||||||||
RBAM_034320__ 149 AATTGGGCGACCGTATCGCCCAATTTTATACAGACCTGAACATTGACGGC 198
BSNT_05677___ 199 CGCTTCCTGGCGCTATCTGACCAGACGTGGGGGCTTCGCAGCTGGTATCC 248
|||||..|.||.||.||.||||||||||||||||||||||||||||||||
RBAM_034320__ 199 CGCTTTATTGCTCTGTCAGACCAGACGTGGGGGCTTCGCAGCTGGTATCC 248
BSNT_05677___ 249 GTATGATCAGCTTGATGAAGAAACTCAGCCGACAGTCAAGGCGAAAAAGA 298
|||.||||||||.||.||||||||.||||||||.||.||.||||||||||
RBAM_034320__ 249 GTACGATCAGCTGGACGAAGAAACACAGCCGACTGTAAAAGCGAAAAAGA 298
BSNT_05677___ 299 AAAAAGCGAAGAAAGCAGTCGAAGAAGATCTTGATCTTGACGAGTTTGAA 348
||||||||||.||||..||.||.||||||||.||.|||||.||.||.||.
RBAM_034320__ 299 AAAAAGCGAAAAAAGTCGTTGAGGAAGATCTCGACCTTGATGAATTCGAG 348
BSNT_05677___ 349 GAGATCGACGAAGACGACCTTGATTTGGATGAAGTTGAGGAAGAACTCGA 398
||..|.||||||||.|||.|.|||.|.||||||.|.||.|||||..|.||
RBAM_034320__ 349 GAAGTTGACGAAGATGACATCGATCTCGATGAAATAGAAGAAGATATTGA 398
BSNT_05677___ 399 TCTTGAAGCCGACGATTTTGACGATGAAGATCT---TGACGAAGACGACG 445
.||||||||.|||...||||||||.||||||.| |||.|||||.||||
RBAM_034320__ 399 CCTTGAAGCAGACAGCTTTGACGACGAAGATATCGATGAAGAAGATGACG 448
BSNT_05677___ 446 ACGATCTTGAGATCGAAGAAGATATTGTTGATGAAGATG---------AT 486
||||.||||||||||||||.||.||..||||.||||||| ||
RBAM_034320__ 449 ACGAGCTTGAGATCGAAGACGAGATGATTGAAGAAGATGAGGAAGATTAT 498
BSNT_05677___ 487 GAAGAAGAGGAA----ATTAAATAG----- 507
||.||.|||||| ||...|.||
RBAM_034320__ 499 GATGATGAGGAAGAGGATCGCAAAGACTGA 528
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