Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05655 and RBAM_034200
See
Amino acid alignment /
Visit
BSNT_05655 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:09
# Commandline: needle
# -asequence dna-align/BSNT_05655___ywkB.1.9828.seq
# -bsequence dna-align/RBAM_034200___ywkB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05655___ywkB-RBAM_034200___ywkB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05655___ywkB-RBAM_034200___ywkB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05655___ywkB
# 2: RBAM_034200___ywkB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 968
# Identity: 794/968 (82.0%)
# Similarity: 794/968 (82.0%)
# Gaps: 19/968 ( 2.0%)
# Score: 3264.5
#
#
#=======================================
BSNT_05655___ 1 TTGAGCATCTTAGATATCTTAATCCTCCTGGCGCCGATCTTCTTTGTTAT 50
||||||.||||||||||.|||||||||||||||||||||||.||.||.||
RBAM_034200__ 1 TTGAGCTTCTTAGATATTTTAATCCTCCTGGCGCCGATCTTTTTCGTGAT 50
BSNT_05655___ 51 CGTGCTGGGTTGGTTTGCAGGACATTTTGGAAGTTATGATGCCAAGTCGG 100
|||||||||.|||||.|||||.|..||.|||||||||||.||.|||||.|
RBAM_034200__ 51 CGTGCTGGGATGGTTCGCAGGTCGCTTCGGAAGTTATGACGCGAAGTCAG 100
BSNT_05655___ 101 CAAAAGGGGTAAGTACGTTAGTAACGAAATACGCACTTCCAGCTCACTTT 150
|||||||||||||.||.|||||.|||||.|||||.|||||.||.||.|||
RBAM_034200__ 101 CAAAAGGGGTAAGCACCTTAGTTACGAAGTACGCGCTTCCGGCGCATTTT 150
BSNT_05655___ 151 ATCGCTGGTATTTTGACAACTTCCAGAAGTGAATTTTTATCACAAGTACC 200
||||||.|||||||.||.|||||.|||||||..|||||||||||.||.||
RBAM_034200__ 151 ATCGCTAGTATTTTAACCACTTCAAGAAGTGCGTTTTTATCACAGGTTCC 200
BSNT_05655___ 201 TTTAATGATTTCTTTAATTATTGGGATTGTTGGTTTCTATATCATCATTC 250
|||||||.|..||||.||.|||||||||||.||.||||.||||.||||||
RBAM_034200__ 201 TTTAATGGTCGCTTTGATCATTGGGATTGTCGGATTCTTTATCGTCATTC 250
BSNT_05655___ 251 TTTTGGTTTGCAGATTTATTTTCAAGTATGATTTAACGAACTCATCTGTA 300
|.||||||||||.||||||.||||||||||||||||||||.|||||||||
RBAM_034200__ 251 TGTTGGTTTGCAAATTTATCTTCAAGTATGATTTAACGAATTCATCTGTA 300
BSNT_05655___ 301 TTTTCTTTGAACTCTGCACAGCCGACATTCGCATTTATGGGTATCCCGGT 350
||||||||.||||||||||||||||||||.||.|||||||||||.||.||
RBAM_034200__ 301 TTTTCTTTAAACTCTGCACAGCCGACATTTGCTTTTATGGGTATTCCTGT 350
BSNT_05655___ 351 ATTGGGAAGCTTATTCGGAGCGAATGAAGTTGCGATTCCGATCGCGGTCA 400
|.|.|||||||||||||||||.|..|||||.||||||||.|||||.||.|
RBAM_034200__ 351 ACTAGGAAGCTTATTCGGAGCAAGCGAAGTAGCGATTCCTATCGCCGTTA 400
BSNT_05655___ 401 CAGGTATCGTGGTTAACGCGATTCTTGATCCGCTCGCGATCATTATCGCT 450
|.|||||||||||||||||.||.|||||.|||||.|||||||||||||||
RBAM_034200__ 401 CGGGTATCGTGGTTAACGCCATCCTTGACCCGCTTGCGATCATTATCGCT 450
BSNT_05655___ 451 ACTGTTGGTGAGTCTTCTAAGAAAAACGAAGAGAGTG---GCGACAGCTT 497
|||||.||||||||.|||||||||| ||||.|.|| .|||.|.|||
RBAM_034200__ 451 ACTGTCGGTGAGTCATCTAAGAAAA---AAGACACTGAAAACGAGAACTT 497
BSNT_05655___ 498 CTGGAAGATGACAGGAAAATCAATCCTGCATGGTCTTTGTGAGCCGCTTG 547
||||||.|||||.||.||.||.||.||.||.|||||||..||.|||||||
RBAM_034200__ 498 CTGGAAAATGACTGGTAAGTCTATTCTTCACGGTCTTTCCGAACCGCTTG 547
BSNT_05655___ 548 CAGCTGCTCCGTTAATCAGTATGATCTTGGTGCT----GGTTTTCAATTT 593
|.|||||.|||.|.||||||||.||..||||.|| |||.| ||
RBAM_034200__ 548 CGGCTGCACCGCTTATCAGTATCATTCTGGTACTCTGCGGTGT--AA--- 592
BSNT_05655___ 594 CACTCTTCCTGAGC-TGGGTGTTAAAATGCTTGATCAGCTTGGAAGCACA 642
||||| |||| || ||||.|..|||||||||||||||||.|||||||||
RBAM_034200__ 593 CACTC--CCTG-GCTTGGGAGAAAAAATGCTTGATCAGCTCGGAAGCACA 639
BSNT_05655___ 643 ACATCTGGTGTTGCTCTCTTTGCTGTTGGTGTTACCGTTGGTATTCGTAA 692
||.||.||||||||.|||||.||.||.|||||.||.||.|||||.||.||
RBAM_034200__ 640 ACGTCAGGTGTTGCGCTCTTCGCCGTCGGTGTAACTGTCGGTATCCGCAA 689
BSNT_05655___ 693 AATTAAACTCAGTATGCCGGCTATCGGTATTGCGTTACTAAAAGTTGCGG 742
.|||||.||||||.||||||||.|||||||.||.||..||||||||||.|
RBAM_034200__ 690 CATTAAGCTCAGTCTGCCGGCTTTCGGTATCGCTTTGTTAAAAGTTGCCG 739
BSNT_05655___ 743 TTCAGCCTGCGTTAATGTTCCTGATTGCTCTTGCTATCGGACTTCCGGCT 792
|||||||||||.|.||||.|.||||.||||||||..||||||||||||||
RBAM_034200__ 740 TTCAGCCTGCGCTGATGTACTTGATCGCTCTTGCAGTCGGACTTCCGGCT 789
BSNT_05655___ 793 GACCAAACAACAAAAGCAATCCTTCTTGTTGCATTCCCTGGTTCTGCCGT 842
|||||.|..||.|||||..|..|.||.||||||||||||||.|||||.||
RBAM_034200__ 790 GACCAGATCACTAAAGCGGTATTGCTCGTTGCATTCCCTGGATCTGCGGT 839
BSNT_05655___ 843 TGCAGCCATGATTGCGACTCGTTTCGAGAAACAAGAAGAAGAAACTGCAA 892
.||.||.||||||||.||.||||||||.||||||||.|||||||||||..
RBAM_034200__ 840 AGCGGCGATGATTGCCACACGTTTCGAAAAACAAGAGGAAGAAACTGCGT 889
BSNT_05655___ 893 CTGCGTTTGTGGTCAGTGCGATTCTGTCATTGATTTCACTTCCAATCATT 942
|.|||||.|||.|||||||||||.|.||..||||.|||||.||.|||||.
RBAM_034200__ 890 CCGCGTTCGTGATCAGTGCGATTTTATCTCTGATCTCACTGCCGATCATC 939
BSNT_05655___ 943 ATCGCGCTTACTGCGTAA 960
||.|||||.|||||.|||
RBAM_034200__ 940 ATTGCGCTGACTGCATAA 957
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.