Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05649 and RBAM_034150

See Amino acid alignment / Visit BSNT_05649 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:08
# Commandline: needle
#    -asequence dna-align/BSNT_05649___ywkF.1.9828.seq
#    -bsequence dna-align/RBAM_034150___ywkF.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05649___ywkF-RBAM_034150___ywkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05649___ywkF-RBAM_034150___ywkF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05649___ywkF
# 2: RBAM_034150___ywkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 325
# Identity:     188/325 (57.8%)
# Similarity:   188/325 (57.8%)
# Gaps:          83/325 (25.5%)
# Score: 445.5
# 
#
#=======================================

BSNT_05649___      1 ATGAAAAAGGCCCTGAC---AGCAGGAATCCT----------GCTCATTG     37
                     .|||||||.||..|.||   .|.|.|.||.||          |||.| ||
RBAM_034150__      1 TTGAAAAAAGCGTTCACCTTCGGATGTATACTCGCCGCCGCAGCTTA-TG     49

BSNT_05649___     38 CGATTGAGAGCATGATTGGCACCATTTTTCCGCAGGCTCTTT--CATATG     85
                     ||       ||..|   ||     ||.|||.||.|    |||  |.| ||
RBAM_034150__     50 CG-------GCGGG---GG-----TTGTTCTGCCG----TTTGGCGT-TG     79

BSNT_05649___     86 A-AGCGATTTTTGG---CGTTGCGTCTCTCGTTTTAGTGGGGCTC-GCGA    130
                     | |.| |||||.||   ||||.||.||.|..||.|.||    |.| ||||
RBAM_034150__     80 ACATC-ATTTTCGGCGCCGTTACGGCTGTTCTTATCGT----CACAGCGA    124

BSNT_05649___    131 TCATTACATCGGGTTTGGCTGTAAGCGGAAGC-GATCAGCGGGCAAACTA    179
                     ||||....||.||.|||||.|||||||| ||| ||.||||||||.||.||
RBAM_034150__    125 TCATCGTTTCCGGGTTGGCCGTAAGCGG-AGCGGAGCAGCGGGCCAATTA    173

BSNT_05649___    180 CCATTCAGAAACCAAAGAAGGCCGTACATCTCGCA--------TGAAAAT    221
                     .|||||.|||||..|||||||.||        |||        |.||.||
RBAM_034150__    174 TCATTCTGAAACAGAAGAAGGACG--------GCACGCCCGTTTAAAGAT    215

BSNT_05649___    222 GGCGGCCGCTTTCTTTGTTGCGGCGATACCT-TCCATTCTA---TGTTAT    267
                     |||.||||.||||||  |||||.||    || |||.||| |   .|.|.|
RBAM_034150__    216 GGCCGCCGTTTTCTT--TTGCGCCG----CTCTCCCTTC-AGCCGGCTGT    258

BSNT_05649___    268 TTGCTG---ACGATTTTGTTTTAA-    288
                     .|||||   |||.||.|||    | 
RBAM_034150__    259 CTGCTGATTACGCTTCTGT----AG    279


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