Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05649 and RBAM_034150
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:08
# Commandline: needle
# -asequence dna-align/BSNT_05649___ywkF.1.9828.seq
# -bsequence dna-align/RBAM_034150___ywkF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05649___ywkF-RBAM_034150___ywkF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05649___ywkF-RBAM_034150___ywkF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05649___ywkF
# 2: RBAM_034150___ywkF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 325
# Identity: 188/325 (57.8%)
# Similarity: 188/325 (57.8%)
# Gaps: 83/325 (25.5%)
# Score: 445.5
#
#
#=======================================
BSNT_05649___ 1 ATGAAAAAGGCCCTGAC---AGCAGGAATCCT----------GCTCATTG 37
.|||||||.||..|.|| .|.|.|.||.|| |||.| ||
RBAM_034150__ 1 TTGAAAAAAGCGTTCACCTTCGGATGTATACTCGCCGCCGCAGCTTA-TG 49
BSNT_05649___ 38 CGATTGAGAGCATGATTGGCACCATTTTTCCGCAGGCTCTTT--CATATG 85
|| ||..| || ||.|||.||.| ||| |.| ||
RBAM_034150__ 50 CG-------GCGGG---GG-----TTGTTCTGCCG----TTTGGCGT-TG 79
BSNT_05649___ 86 A-AGCGATTTTTGG---CGTTGCGTCTCTCGTTTTAGTGGGGCTC-GCGA 130
| |.| |||||.|| ||||.||.||.|..||.|.|| |.| ||||
RBAM_034150__ 80 ACATC-ATTTTCGGCGCCGTTACGGCTGTTCTTATCGT----CACAGCGA 124
BSNT_05649___ 131 TCATTACATCGGGTTTGGCTGTAAGCGGAAGC-GATCAGCGGGCAAACTA 179
||||....||.||.|||||.|||||||| ||| ||.||||||||.||.||
RBAM_034150__ 125 TCATCGTTTCCGGGTTGGCCGTAAGCGG-AGCGGAGCAGCGGGCCAATTA 173
BSNT_05649___ 180 CCATTCAGAAACCAAAGAAGGCCGTACATCTCGCA--------TGAAAAT 221
.|||||.|||||..|||||||.|| ||| |.||.||
RBAM_034150__ 174 TCATTCTGAAACAGAAGAAGGACG--------GCACGCCCGTTTAAAGAT 215
BSNT_05649___ 222 GGCGGCCGCTTTCTTTGTTGCGGCGATACCT-TCCATTCTA---TGTTAT 267
|||.||||.|||||| |||||.|| || |||.||| | .|.|.|
RBAM_034150__ 216 GGCCGCCGTTTTCTT--TTGCGCCG----CTCTCCCTTC-AGCCGGCTGT 258
BSNT_05649___ 268 TTGCTG---ACGATTTTGTTTTAA- 288
.||||| |||.||.||| |
RBAM_034150__ 259 CTGCTGATTACGCTTCTGT----AG 279
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