Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05647 and RBAM_034130
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:08
# Commandline: needle
# -asequence dna-align/BSNT_05647___spoIIR.1.9828.seq
# -bsequence dna-align/RBAM_034130___spoIIR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05647___spoIIR-RBAM_034130___spoIIR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05647___spoIIR-RBAM_034130___spoIIR.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05647___spoIIR
# 2: RBAM_034130___spoIIR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 693
# Identity: 515/693 (74.3%)
# Similarity: 515/693 (74.3%)
# Gaps: 30/693 ( 4.3%)
# Score: 1882.5
#
#
#=======================================
BSNT_05647___ 1 ATGAAAAAAACAGTAATCATTTGTATATATATCTTTCTTTTATTATCTGG 50
||||||.|.||..|.||.||.||.||||||||.||||||||||||||.||
RBAM_034130__ 1 ATGAAACAGACCATGATGATCTGCATATATATTTTTCTTTTATTATCAGG 50
BSNT_05647___ 51 AGCGCTCGTAGGGCTGGCAAAAGAAGAGACGGCACAGAAATCGGAAAATC 100
||||||.|..||..||.||||||||||.|||||.|.|..|||.|..|||.
RBAM_034130__ 51 AGCGCTTGCGGGTTTGACAAAAGAAGAAACGGCGCGGGCATCAGCCAATG 100
BSNT_05647___ 101 AGCCGGTGGTCATACCGGATCAGGCGATTCGTTTGAGAATATTGGCAAAC 150
||||.||.||||||||||||.|.|||||.||..|.||.||.|||||.|||
RBAM_034130__ 101 AGCCCGTTGTCATACCGGATGAAGCGATCCGGCTCAGGATTTTGGCCAAC 150
BSNT_05647___ 151 AGCGATAGTGATCAAGATCAGCAATTAAAACGTCATATAAGAGACGCGGT 200
||.||||..|||.|.|||||..|..|.||.||.||.||.|||||.||.||
RBAM_034130__ 151 AGTGATAACGATGAGGATCAAAAGCTCAAGCGCCAGATCAGAGATGCTGT 200
BSNT_05647___ 201 GAATAAAGAAATCAC-AACTTGGGTAAAGGATATTACTTCTATTGAAGAA 249
.||.||..||||.|| .|| |||||.||.|||||.|||||.|||||||||
RBAM_034130__ 201 AAACAAGCAAATTACGGAC-TGGGTGAAAGATATCACTTCCATTGAAGAA 249
BSNT_05647___ 250 GCGCGTCGCGTGATTCGTTCAAAGCTGCCTGAAATCAAAGCAATTGCAAA 299
|||||.||..|.||||||||.|||||.||||||||.||||.|||.||.||
RBAM_034130__ 250 GCGCGGCGGCTCATTCGTTCGAAGCTTCCTGAAATTAAAGAAATCGCCAA 299
BSNT_05647___ 300 GGAAACAATGGAGAAAGAA---GGAGCGAATCAGTCGATATCCGTTGATT 346
..||||.|| ||||||| ||.|||.||||.||..|.||.|||.|.|
RBAM_034130__ 300 ACAAACGAT---GAAAGAAAAGGGTGCGCATCAATCCGTTTCAGTTCAAT 346
BSNT_05647___ 347 TTGACAAAATCTCGTTTCCGACAAAGCTTTACGGCAACATGGTATATCCT 396
|..|.|||||||||||||||||||||||.||||||||.|||||.|||||.
RBAM_034130__ 347 TCAATAAAATCTCGTTTCCGACAAAGCTCTACGGCAATATGGTCTATCCG 396
BSNT_05647___ 397 GCCGGTGAGTATGAAGCGATTTTGATTACGCTTGGAAACGGAGACGGCGC 446
|||||..|.||||||||||||||.|||||.||.||.||.||.||.|||||
RBAM_034130__ 397 GCCGGAAAATATGAAGCGATTTTAATTACACTCGGCAATGGCGAGGGCGC 446
BSNT_05647___ 447 CAACTGGTGGTGTGTGCTGTTCCCGCCCCTCTGCTTTCTCGATTTTTCTA 496
||||||||||||.||..||||.|||||.||.|||||.||.|||||.||.|
RBAM_034130__ 447 CAACTGGTGGTGCGTCTTGTTTCCGCCGCTGTGCTTCCTTGATTTCTCAA 496
BSNT_05647___ 497 ACGGGGAAGCCGTCAAAGAACAAGAAGA-----TAAAGAAGC-------- 533
||||.|||||.||.|||||.||.||||| .|.||||||
RBAM_034130__ 497 ACGGCGAAGCGGTGAAAGATCAGGAAGACGGCGGACAGAAGCAGGGAGAA 546
BSNT_05647___ 534 -CTCAAAAAAGCAGACTGAAAAAGTGCTTGAGGACGTAACCGCTAAAGCG 582
|.||.||| ||||||.||||||||||.||.|||||||...|.||.||.
RBAM_034130__ 547 ACGCAGAAA--CAGACTAAAAAAGTGCTGGATGACGTAAAAACAAAGGCT 594
BSNT_05647___ 583 GAAAAAGCCAAAAAAGAAGAGAATAAAGAAAAAGAAGACGGCACAGAAGT 632
||.|||||.||.|||||| ||||||| |.||.||.|..||.|||||
RBAM_034130__ 595 GATAAAGCGAAGAAAGAA---AATAAAG---ATGACGATGATACCGAAGT 638
BSNT_05647___ 633 GAAATTCTTTTTAGTCGAATGGATTTCCGACCTTTTTTCCTAA 675
|||.||.||..|.|||||.||||||||.||.||.|||||||.|
RBAM_034130__ 639 GAAGTTTTTCCTCGTCGATTGGATTTCAGATCTATTTTCCTGA 681
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