Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05646 and RBAM_034120
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:08
# Commandline: needle
# -asequence dna-align/BSNT_05646___ywlB.1.9828.seq
# -bsequence dna-align/RBAM_034120___ywlB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05646___ywlB-RBAM_034120___ywlB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05646___ywlB-RBAM_034120___ywlB.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05646___ywlB
# 2: RBAM_034120___ywlB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 468
# Identity: 319/468 (68.2%)
# Similarity: 319/468 (68.2%)
# Gaps: 48/468 (10.3%)
# Score: 1007.0
#
#
#=======================================
BSNT_05646___ 1 ATGTTTTATCAACTGCGGGTGGCAAGGGA--AAAAGACGGAGATGTGCTC 48
|||||||||||.|||.|.||||||||.|| ||.|.|||||| |.|||.
RBAM_034120__ 1 ATGTTTTATCAGCTGAGAGTGGCAAGAGATCAAGATACGGAG--GCGCTG 48
BSNT_05646___ 49 GAGGCATTTTTAAAACAGGCAAAAAC--CAGCTATGAAGGCGTGAA---- 92
|||||.|||||.|||.||||..|.|| || .|.||| |||
RBAM_034120__ 49 GAGGCCTTTTTGAAAAAGGCTGATACGGCA------CATGCG-GAAATCG 91
BSNT_05646___ 93 ---AGAAGGCTTCACTCAATTTCTTATGCTGGAGGACAGTGAGAAAAACA 139
||.|| .|||..|..|||.|..|.|||||.|||||.||.||||..|
RBAM_034120__ 92 ATCAGCAG--ATCAGCCGGTTTATCGTACTGGAAGACAGCGAAAAAATGA 139
BSNT_05646___ 140 TTGCCGGATGCCTCGGTATTGAAAAAATAAGCTGTGACCAGGGGCTGCTG 189
||||||..||.|||||.||.||||||.|.|||.|.|...|.|||||.||.
RBAM_034120__ 140 TTGCCGCCTGTCTCGGGATCGAAAAATTCAGCGGCGGAAAAGGGCTTCTC 189
BSNT_05646___ 190 CGATCACTTGTCATATCGGACAAGCTTCACCAAGGCCATATCGTCACGCT 239
||.|||||.|||||.|||||||.|||..|.|||.||||||||||.||.||
RBAM_034120__ 190 CGTTCACTCGTCATGTCGGACAGGCTGAATCAAAGCCATATCGTTACACT 239
BSNT_05646___ 240 TTTTCAAAGCATGGAGGTGCTGTGCGAAAAGCATCAGA-TCAAAACCGTG 288
.||||||||.|||||.|||||||||.||||.|||.||| ||||.| .||.
RBAM_034120__ 240 GTTTCAAAGTATGGATGTGCTGTGCAAAAAACATGAGATTCAAGA-TGTC 288
BSNT_05646___ 289 TACCTAGTAGCAAATCAGCATTCCTCTGCGGACTTTCTGACGGCCATGGG 338
|||.||||.||.|||||||..||.|||||.||.|||||||..|..|||||
RBAM_034120__ 289 TACTTAGTCGCCAATCAGCCCTCATCTGCTGAGTTTCTGAATGTGATGGG 338
BSNT_05646___ 339 TTTTGAA---AGAGCTGAGAGTGTACCGGAGGAGCTGTTTTCTTCTGATC 385
.|||||| .|.||||| ||..||.||.||.||||.|.|.||.||.|
RBAM_034120__ 339 ATTTGAAGCGTGCGCTGA---TGCGCCTGATGAACTGTATACGTCCGAAC 385
BSNT_05646___ 386 ACTTCTGTGATTCG--CGGCAAACAGAAGGAGCCGTTT----TGATGAAA 429
|.|||.|..|.||| ..|| |||||||| ..||||| ||.|||||
RBAM_034120__ 386 ATTTCCGCAACTCGTTATGC--ACAGAAGG-TTCGTTTTTAATGGTGAAA 432
BSNT_05646___ 430 AAAGCGTCTG---GATAA 444
| |.|||| ||
RBAM_034120__ 433 A---CCTCTGCCTGA--- 444
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