Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05626 and RBAM_034000

See Amino acid alignment / Visit BSNT_05626 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:07
# Commandline: needle
#    -asequence dna-align/BSNT_05626___atpH.1.9828.seq
#    -bsequence dna-align/RBAM_034000___atpH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05626___atpH-RBAM_034000___atpH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05626___atpH-RBAM_034000___atpH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05626___atpH
# 2: RBAM_034000___atpH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 555
# Identity:     454/555 (81.8%)
# Similarity:   454/555 (81.8%)
# Gaps:          18/555 ( 3.2%)
# Score: 1862.5
# 
#
#=======================================

BSNT_05626___      1 ATGAGTGGATCAGCTGTCTCTAAACGATATGCATCAGCTCTTTTTGATAT     50
                     |||||||||||.|||||||||||||||||.||.|||||.|||||.||.||
RBAM_034000__      1 ATGAGTGGATCTGCTGTCTCTAAACGATACGCGTCAGCGCTTTTCGACAT     50

BSNT_05626___     51 AGCCAATGAGTCCGCTCAGCTGAATCAAGTAGAAGAAGAGCTAACTGTTG    100
                     .|||..||||.|..||||..|.|||.||.|.|||||||||||.||.||..
RBAM_034000__     51 TGCCGTTGAGACTTCTCAAATCAATGAAATCGAAGAAGAGCTTACCGTAC    100

BSNT_05626___    101 TAAAACAAGTATTTCAAAATGAAAAAGC--GCTTA-ATGATGTGTTGAAC    147
                     |||||.||||.||.|..||.|   ||||  |.||| |.||.|||||.|.|
RBAM_034000__    101 TAAAAGAAGTGTTCCGGAACG---AAGCCGGATTACAGGAAGTGTTAAGC    147

BSNT_05626___    148 CATCCGAAGATGCCGGCTGCGAAGAAAAAAGAGCTGATCCA-AAATGCAT    196
                     |||||||||.|..||||.||.|||||||||||||||||.|| .||| |.|
RBAM_034000__    148 CATCCGAAGGTATCGGCCGCTAAGAAAAAAGAGCTGATTCAGCAAT-CGT    196

BSNT_05626___    197 TTGGCTCTTTGTCACAGTCCGTGCTTAATACGATTTTTCTTTTGATTGAC    246
                     |.|||.|..||||..||||.|||||..||||||||||||||.||||||||
RBAM_034000__    197 TCGGCGCACTGTCTGAGTCTGTGCTGCATACGATTTTTCTTCTGATTGAC    246

BSNT_05626___    247 CGCCATCGTGCCG-----CGATTGTGCTTGAGCTCACAGATGAGTTTATC    291
                     ||||     ||||     |||||||||.|||.||||||||.|||||||||
RBAM_034000__    247 CGCC-----GCCGGTCTTCGATTGTGCCTGATCTCACAGACGAGTTTATC    291

BSNT_05626___    292 AAACTCGCAAATGAGGCCCGTCAAACAGAAGACGCAATCGTATATTCAGT    341
                     |||||.||.|||.||||||||||.|||||.|||||..|.||.||||||||
RBAM_034000__    292 AAACTTGCCAATCAGGCCCGTCAGACAGAGGACGCGGTTGTTTATTCAGT    341

BSNT_05626___    342 GAAACCGCTGACGGATGCTGAAATGTTACCATTATCACAAGTGTTTGCAA    391
                     .|||||||||.|.||.||.|||||||||.||||.||.|||||||||||||
RBAM_034000__    342 AAAACCGCTGTCAGAAGCGGAAATGTTATCATTGTCTCAAGTGTTTGCAA    391

BSNT_05626___    392 AAAAGGCCGGAGTCGCTTCACTGAGAATCAGAAATGAAGTGCAGACGGAT    441
                     ||||.||||||.|||||||.||.|||||||||||||||||||||||||||
RBAM_034000__    392 AAAAAGCCGGAATCGCTTCGCTCAGAATCAGAAATGAAGTGCAGACGGAT    441

BSNT_05626___    442 TTAATAGGCGGCATTAAAGTCCGCATTGGAAACCGGATTTATGACGGCAG    491
                     |||||||||||||||||||||||||||||||||||||||||||||||.||
RBAM_034000__    442 TTAATAGGCGGCATTAAAGTCCGCATTGGAAACCGGATTTATGACGGAAG    491

BSNT_05626___    492 CGTAAGCGGGAAGCTTCAGCGCATTGAACGTCAATTAGCCGGGGAAAATC    541
                     |||||||||.||||||.|||||||.|||||||||.|.|||||.|.|||||
RBAM_034000__    492 CGTAAGCGGAAAGCTTGAGCGCATGGAACGTCAACTTGCCGGAGGAAATC    541

BSNT_05626___    542 GATAG    546
                     |||||
RBAM_034000__    542 GATAG    546


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