Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05619 and RBAM_033950
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:06
# Commandline: needle
# -asequence dna-align/BSNT_05619___ywmA.1.9828.seq
# -bsequence dna-align/RBAM_033950___ywmA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05619___ywmA-RBAM_033950___ywmA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05619___ywmA-RBAM_033950___ywmA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05619___ywmA
# 2: RBAM_033950___ywmA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 527
# Identity: 358/527 (67.9%)
# Similarity: 358/527 (67.9%)
# Gaps: 76/527 (14.4%)
# Score: 1255.5
#
#
#=======================================
BSNT_05619___ 1 ATGGTATACTTTATTGGAAAGGAGCTGGCAAATGTGAATCATTCTTTTTT 50
.||||||||||.|||||
RBAM_033950__ 1 ---------------------------------ATGAATCATTCCTTTTT 17
BSNT_05619___ 51 TCAGCCTGAAAAGCAATATGGTGAGGAC-CTGCCAATTTTTGATCAGGAA 99
|||.||.||||||||.|||||.|| .|| ||.||..|.|||||.||.||.
RBAM_033950__ 18 TCATCCGGAAAAGCAGTATGGAGA-AACACTTCCCGTATTTGACCACGAG 66
BSNT_05619___ 100 TGGGAAGCAATTGCATTCTATTATGATTATAGACAGTCACAGATTGAAGA 149
||||||||.||.||||||||.|||||||||||||||||.||.|..||.||
RBAM_033950__ 67 TGGGAAGCGATAGCATTCTACTATGATTATAGACAGTCTCAAACAGAGGA 116
BSNT_05619___ 150 ACTGAATGAATTGTGTCAGTTTTTTAACATTTCTCTTACCTATACGAGAG 199
||||||.|||||.|||||||||||.||||||||||||...|||.|..|.|
RBAM_033950__ 117 ACTGAAAGAATTATGTCAGTTTTTCAACATTTCTCTTGATTATTCACGCG 166
BSNT_05619___ 200 AAAGC---CTTGAAGAGCTTGAAAAC-CTTTATTTTCAAAGTATACAAGA 245
..||| ||.|||| ||.||.| |||||.||.|..||.||||||||
RBAM_033950__ 167 GCAGCCTGCTGGAAG----TGGAAGCTCTTTACTTCCGCAGCATACAAGA 212
BSNT_05619___ 246 GCTTTTGCTT---GCTGATTGGAATCTTCCTATTGAAGAATTCGAGAAAA 292
|| ||||| ||.||||||||.||.||.|||||.|||||.|||||||
RBAM_033950__ 213 GC---TGCTTTTGGCGGATTGGAACCTGCCGATTGACGAATTTGAGAAAA 259
BSNT_05619___ 293 TGATCAGTGTTTATCTTATAGATTGCGTGATTGCCCGCCATGAAGATGCT 342
||.|||||||.|||.|.||.|||||||..||....|.||||||.|||||.
RBAM_033950__ 260 TGCTCAGTGTGTATGTCATCGATTGCGCCATCAGACACCATGACGATGCC 309
BSNT_05619___ 343 GAATGGGTTGTAAAACCTTATCCCTATAAAGACGGCGCTTATAC-ACTTG 391
||||||||.||.|||||||||||.||||..||||||||.||||| || |
RBAM_033950__ 310 GAATGGGTCGTCAAACCTTATCCGTATACGGACGGCGCCTATACGAC--G 357
BSNT_05619___ 392 GCTTT----AGAAGACATCGCAAATCGTGGCATAC-----AATGAATGCC 432
|.|.| |||.||.| ||||.|||||||.|| |.|| |
RBAM_033950__ 358 GGTGTGCGGAGAGGAAA---CAAAACGTGGCACACCGACAACTG-----C 399
BSNT_05619___ 433 TGTGATGGTTTATACCTGCGCCAAGAAGAGGATCGCCCGCTGCTGTCG-- 480
||.||...||||||.||||...||||||||||||..||||| |.|||
RBAM_033950__ 400 TGCGAACATTTATATCTGCAAAAAGAAGAGGATCATCCGCT--TATCGGC 447
BSNT_05619___ 481 CTGTTTGATTCTCTTGTTCGTTCATAA 507
.|.|.|||.||||||.|.||||.|
RBAM_033950__ 448 GTCTATGAATCTCTTATGCGTTAA--- 471
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