Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05611 and RBAM_033900

See Amino acid alignment / Visit BSNT_05611 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:06
# Commandline: needle
#    -asequence dna-align/BSNT_05611___ywmC.1.9828.seq
#    -bsequence dna-align/RBAM_033900___ywmC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05611___ywmC-RBAM_033900___ywmC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05611___ywmC-RBAM_033900___ywmC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05611___ywmC
# 2: RBAM_033900___ywmC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 730
# Identity:     482/730 (66.0%)
# Similarity:   482/730 (66.0%)
# Gaps:          89/730 (12.2%)
# Score: 1492.0
# 
#
#=======================================

BSNT_05611___      1 ATGAAGAAAAGACTTTCACTGATCATGATGACAGGATTGCTTTTTGGAT-     49
                     |||||.||||.|.|||||||.||..|.|||...|||||        ||| 
RBAM_033900__      1 ATGAAAAAAACATTTTCACTCATACTCATGCTCGGATT--------GATG     42

BSNT_05611___     50 -TAACT------TCACCTGCTTTTGCAGCTGAAAAGACAGAAACG----G     88
                      |.|||      ||.|||||||||||.||.||.||..|  |||||    |
RBAM_033900__     43 CTGACTGCTGCATCTCCTGCTTTTGCTGCCGAGAATGC--AAACGAGAAG     90

BSNT_05611___     89 AGGCT--------AAAGCGCCGGCGAACGTGGCGGTCTTGCTTGATGCCA    130
                     |..||        |||.|       ||....||..|.||.||||||||.|
RBAM_033900__     91 ACTCTTTCATTTAAAAAC-------AATACCGCCATTTTACTTGATGCGA    133

BSNT_05611___    131 GCGGAAGTATGGCGAAAAGAATAGATGGTGTATCTAAATTTAATTCA--G    178
                     ||||.||||||||.|||.|.||.||.|||||.|||||||..||  ||  |
RBAM_033900__    134 GCGGCAGTATGGCAAAACGGATTGACGGTGTTTCTAAATACAA--CATGG    181

BSNT_05611___    179 CCAAAAAAGAAATTTCAAAG-----TTTGCGAGCTCATTGCCAGAAGGAA    223
                     |.|||.||||||||     |     |||||| |.|||       ||..||
RBAM_033900__    182 CAAAAGAAGAAATT-----GTCCGTTTTGCG-GATCA-------AATTAA    218

BSNT_05611___    224 --------CTCAGGTGAAAATGAGCGTGTTTGGCTCTGAAGGAAACAATA    265
                             |.|||||.|.|||||..||.||.||.||.|||||.||.||||
RBAM_033900__    219 ATCTAAATCACAGGTCAGAATGACGGTTTTCGGTTCGGAAGGCAATAATA    268

BSNT_05611___    266 AAAATTCCGGAAAAGTTCAGTCATGTGAAGCCATTCGCAACGTATACGGC    315
                     ||||.||||||||.|||||.||.||||||.||||||||...||.|||||.
RBAM_033900__    269 AAAACTCCGGAAAGGTTCAATCTTGTGAATCCATTCGCGGTGTGTACGGA    318

BSNT_05611___    316 TTCCAAAGCTTTAACGAG-CAAAGTTTCCTCAATTCTCTCAATACAATTG    364
                     ||||||||.|||.|| || ||.||.|||||.||.|||||.||...|||.|
RBAM_033900__    319 TTCCAAAGGTTTGAC-AGACAGAGCTTCCTTAACTCTCTTAACGGAATCG    367

BSNT_05611___    365 GGCCGACTGGCTGGACGCCAATTGCCAAAGCGCTGAACGAGGCGAAATCT    414
                     ||||.||.||||||||.||.|||||.|||||..|..|.||.|||||..||
RBAM_033900__    368 GGCCTACGGGCTGGACACCGATTGCAAAAGCATTAGAGGATGCGAAGGCT    417

BSNT_05611___    415 TCTTTTGACCAGCTTG-ATGCAAAAGGGGAA--AAAGTGGTGTATCTGTT    461
                     ||.||| |||.|.||| |  ||||...||.|  |||...||.|..|||||
RBAM_033900__    418 TCCTTT-ACCGGTTTGCA--CAAACTTGGCAGTAAATCCGTTTTCCTGTT    464

BSNT_05611___    462 GACAGACGGTGAGGAAACGTGCGGAGGAAACCCGATTAAAACAGCAAAGG    511
                     |||.|||||.|||||.||.|||||||||.|.||..||||.|||||.||.|
RBAM_033900__    465 GACGGACGGCGAGGAGACATGCGGAGGAGATCCTGTTAAGACAGCGAAAG    514

BSNT_05611___    512 AACTGCAAAAAGAGAATATCACTGTTAATGTGATCGGCTTTGATTATAAA    561
                     ||||.|..|||.||.||||.|..||.||.||||||||||||||.|.|||.
RBAM_033900__    515 AACTTCGCAAACAGCATATTAAAGTCAACGTGATCGGCTTTGACTTTAAG    564

BSNT_05611___    562 GAGGGATACAAAGGCCAGCTGAACGCAATTGCGAAAGTAGGCGGCGGTGA    611
                     ||.||.|.|||.||||||||..|||..|||||.||||..|||||.||..|
RBAM_033900__    565 GAAGGCTTCAACGGCCAGCTTCACGAGATTGCCAAAGCGGGCGGAGGAAA    614

BSNT_05611___    612 ATACTTCCCGGTTTATACCCAAAAAGATGTTGA---GAAAATTTTCACT-    657
                     |||.|.|...|.|.|.|.||||||.||| .|||   |.|..|||.||.| 
RBAM_033900__    615 ATATTACGAAGCTCACAGCCAAAAGGAT-ATGAACCGCATCTTTACAATG    663

BSNT_05611___    658 -CAGCAA--TCACTAATGTTATCTAAATAA    684
                      ||||.|  |||      |||.|..|||||
RBAM_033900__    664 GCAGCGAGTTCA------TTAGCGGAATAA    687


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