Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05611 and RBAM_033900
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:06
# Commandline: needle
# -asequence dna-align/BSNT_05611___ywmC.1.9828.seq
# -bsequence dna-align/RBAM_033900___ywmC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05611___ywmC-RBAM_033900___ywmC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05611___ywmC-RBAM_033900___ywmC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05611___ywmC
# 2: RBAM_033900___ywmC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 730
# Identity: 482/730 (66.0%)
# Similarity: 482/730 (66.0%)
# Gaps: 89/730 (12.2%)
# Score: 1492.0
#
#
#=======================================
BSNT_05611___ 1 ATGAAGAAAAGACTTTCACTGATCATGATGACAGGATTGCTTTTTGGAT- 49
|||||.||||.|.|||||||.||..|.|||...||||| |||
RBAM_033900__ 1 ATGAAAAAAACATTTTCACTCATACTCATGCTCGGATT--------GATG 42
BSNT_05611___ 50 -TAACT------TCACCTGCTTTTGCAGCTGAAAAGACAGAAACG----G 88
|.||| ||.|||||||||||.||.||.||..| ||||| |
RBAM_033900__ 43 CTGACTGCTGCATCTCCTGCTTTTGCTGCCGAGAATGC--AAACGAGAAG 90
BSNT_05611___ 89 AGGCT--------AAAGCGCCGGCGAACGTGGCGGTCTTGCTTGATGCCA 130
|..|| |||.| ||....||..|.||.||||||||.|
RBAM_033900__ 91 ACTCTTTCATTTAAAAAC-------AATACCGCCATTTTACTTGATGCGA 133
BSNT_05611___ 131 GCGGAAGTATGGCGAAAAGAATAGATGGTGTATCTAAATTTAATTCA--G 178
||||.||||||||.|||.|.||.||.|||||.|||||||..|| || |
RBAM_033900__ 134 GCGGCAGTATGGCAAAACGGATTGACGGTGTTTCTAAATACAA--CATGG 181
BSNT_05611___ 179 CCAAAAAAGAAATTTCAAAG-----TTTGCGAGCTCATTGCCAGAAGGAA 223
|.|||.|||||||| | |||||| |.||| ||..||
RBAM_033900__ 182 CAAAAGAAGAAATT-----GTCCGTTTTGCG-GATCA-------AATTAA 218
BSNT_05611___ 224 --------CTCAGGTGAAAATGAGCGTGTTTGGCTCTGAAGGAAACAATA 265
|.|||||.|.|||||..||.||.||.||.|||||.||.||||
RBAM_033900__ 219 ATCTAAATCACAGGTCAGAATGACGGTTTTCGGTTCGGAAGGCAATAATA 268
BSNT_05611___ 266 AAAATTCCGGAAAAGTTCAGTCATGTGAAGCCATTCGCAACGTATACGGC 315
||||.||||||||.|||||.||.||||||.||||||||...||.|||||.
RBAM_033900__ 269 AAAACTCCGGAAAGGTTCAATCTTGTGAATCCATTCGCGGTGTGTACGGA 318
BSNT_05611___ 316 TTCCAAAGCTTTAACGAG-CAAAGTTTCCTCAATTCTCTCAATACAATTG 364
||||||||.|||.|| || ||.||.|||||.||.|||||.||...|||.|
RBAM_033900__ 319 TTCCAAAGGTTTGAC-AGACAGAGCTTCCTTAACTCTCTTAACGGAATCG 367
BSNT_05611___ 365 GGCCGACTGGCTGGACGCCAATTGCCAAAGCGCTGAACGAGGCGAAATCT 414
||||.||.||||||||.||.|||||.|||||..|..|.||.|||||..||
RBAM_033900__ 368 GGCCTACGGGCTGGACACCGATTGCAAAAGCATTAGAGGATGCGAAGGCT 417
BSNT_05611___ 415 TCTTTTGACCAGCTTG-ATGCAAAAGGGGAA--AAAGTGGTGTATCTGTT 461
||.||| |||.|.||| | ||||...||.| |||...||.|..|||||
RBAM_033900__ 418 TCCTTT-ACCGGTTTGCA--CAAACTTGGCAGTAAATCCGTTTTCCTGTT 464
BSNT_05611___ 462 GACAGACGGTGAGGAAACGTGCGGAGGAAACCCGATTAAAACAGCAAAGG 511
|||.|||||.|||||.||.|||||||||.|.||..||||.|||||.||.|
RBAM_033900__ 465 GACGGACGGCGAGGAGACATGCGGAGGAGATCCTGTTAAGACAGCGAAAG 514
BSNT_05611___ 512 AACTGCAAAAAGAGAATATCACTGTTAATGTGATCGGCTTTGATTATAAA 561
||||.|..|||.||.||||.|..||.||.||||||||||||||.|.|||.
RBAM_033900__ 515 AACTTCGCAAACAGCATATTAAAGTCAACGTGATCGGCTTTGACTTTAAG 564
BSNT_05611___ 562 GAGGGATACAAAGGCCAGCTGAACGCAATTGCGAAAGTAGGCGGCGGTGA 611
||.||.|.|||.||||||||..|||..|||||.||||..|||||.||..|
RBAM_033900__ 565 GAAGGCTTCAACGGCCAGCTTCACGAGATTGCCAAAGCGGGCGGAGGAAA 614
BSNT_05611___ 612 ATACTTCCCGGTTTATACCCAAAAAGATGTTGA---GAAAATTTTCACT- 657
|||.|.|...|.|.|.|.||||||.||| .||| |.|..|||.||.|
RBAM_033900__ 615 ATATTACGAAGCTCACAGCCAAAAGGAT-ATGAACCGCATCTTTACAATG 663
BSNT_05611___ 658 -CAGCAA--TCACTAATGTTATCTAAATAA 684
||||.| ||| |||.|..|||||
RBAM_033900__ 664 GCAGCGAGTTCA------TTAGCGGAATAA 687
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