Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05587 and RBAM_033780

See Amino acid alignment / Visit BSNT_05587 in genome browser / Return to Orthologue table
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# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:04
# Commandline: needle
#    -asequence dna-align/BSNT_05587___ywnC.1.9828.seq
#    -bsequence dna-align/RBAM_033780___ywnC.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05587___ywnC-RBAM_033780___ywnC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05587___ywnC-RBAM_033780___ywnC.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05587___ywnC
# 2: RBAM_033780___ywnC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 410
# Identity:     278/410 (67.8%)
# Similarity:   278/410 (67.8%)
# Gaps:          49/410 (12.0%)
# Score: 891.0
# 
#
#=======================================

BSNT_05587___      1 ATGAATCCTGAAACAATGAACAAAACCCTCATCAGC--------ATTTCG     42
                     .||||.||||||.||.||||        ||.|..||        ||||||
RBAM_033780__      1 TTGAAACCTGAATCAGTGAA--------TCGTTCGCTTATTTCTATTTCG     42

BSNT_05587___     43 AAATGGGGAAAAGCTACAGGCATTTTATTTATTATTATGGGCGCAATTAC     92
                     ||||||||||||||.|||||.||||||||||||||||||||.||..||.|
RBAM_033780__     43 AAATGGGGAAAAGCGACAGGTATTTTATTTATTATTATGGGTGCGTTTGC     92

BSNT_05587___     93 CGCGCTTTCAGGCGCGTTCTTTTTTCTAATCGGTGCCGTGCCAGGCGTAC    142
                     .|||||.||.||||||||.||.|||.|||||||.|||.|.||.|||||..
RBAM_033780__     93 GGCGCTGTCGGGCGCGTTTTTCTTTTTAATCGGAGCCATTCCCGGCGTTT    142

BSNT_05587___    143 TGCAAATTATTTCCGGTATCTTTTTGATGAGGTCAGCTAGGGAAGCAGGC    192
                     ||||.||.|||.||||.||.|||.|||||.|.||.||.|..|||||.||.
RBAM_033780__    143 TGCAGATCATTGCCGGCATTTTTCTGATGCGCTCGGCAAATGAAGCGGGA    192

BSNT_05587___    193 CAAATGGCTGAACA---CAAT-AGCGGACAGTCTGAAG--ACTTAATGCT    236
                     ||.|||||.||.||   |||| |.|.|||||     ||  ||.| |||||
RBAM_033780__    193 CAGATGGCGGAGCAGTTCAATGAACTGACAG-----AGGAACAT-ATGCT    236

BSNT_05587___    237 GGAGAATTACGCGAAATTCGTAAAGATGCAAGGGATTTATTTGATCGTAA    286
                     |||||||||.||.||.|||||.||.|||||.|||||.||..||||.||.|
RBAM_033780__    237 GGAGAATTATGCAAAGTTCGTGAAAATGCAGGGGATCTACCTGATTGTGA    286

BSNT_05587___    287 GCAT-TGCTGTATCCATTCTTGCGATTATCGCCT-TCTTCA---TCTTTT    331
                     ..|| .||| |.|||.||||.|..|||.|    | ||||||   ||.|..
RBAM_033780__    287 CGATCGGCT-TGTCCGTTCTCGGTATTGT----TCTCTTCATTGTCCTCA    331

BSNT_05587___    332 TAATGCTTGGGATTGCTGATGGCCTTTTCAGCGATACGTA-------CAG    374
                     |.|.|||.||.||.|..||.|||.|.||.|   ||| .||       ||.
RBAM_033780__    332 TGACGCTCGGCATCGTGGACGGCGTGTTTA---ATA-ATATTGATGCCAA    377

BSNT_05587___    375 CACTTATTAA    384
                     .||.||||||
RBAM_033780__    378 TACATATTAA    387


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