Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05587 and RBAM_033780
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_05587___ywnC.1.9828.seq
# -bsequence dna-align/RBAM_033780___ywnC.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05587___ywnC-RBAM_033780___ywnC.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05587___ywnC-RBAM_033780___ywnC.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05587___ywnC
# 2: RBAM_033780___ywnC
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 410
# Identity: 278/410 (67.8%)
# Similarity: 278/410 (67.8%)
# Gaps: 49/410 (12.0%)
# Score: 891.0
#
#
#=======================================
BSNT_05587___ 1 ATGAATCCTGAAACAATGAACAAAACCCTCATCAGC--------ATTTCG 42
.||||.||||||.||.|||| ||.|..|| ||||||
RBAM_033780__ 1 TTGAAACCTGAATCAGTGAA--------TCGTTCGCTTATTTCTATTTCG 42
BSNT_05587___ 43 AAATGGGGAAAAGCTACAGGCATTTTATTTATTATTATGGGCGCAATTAC 92
||||||||||||||.|||||.||||||||||||||||||||.||..||.|
RBAM_033780__ 43 AAATGGGGAAAAGCGACAGGTATTTTATTTATTATTATGGGTGCGTTTGC 92
BSNT_05587___ 93 CGCGCTTTCAGGCGCGTTCTTTTTTCTAATCGGTGCCGTGCCAGGCGTAC 142
.|||||.||.||||||||.||.|||.|||||||.|||.|.||.|||||..
RBAM_033780__ 93 GGCGCTGTCGGGCGCGTTTTTCTTTTTAATCGGAGCCATTCCCGGCGTTT 142
BSNT_05587___ 143 TGCAAATTATTTCCGGTATCTTTTTGATGAGGTCAGCTAGGGAAGCAGGC 192
||||.||.|||.||||.||.|||.|||||.|.||.||.|..|||||.||.
RBAM_033780__ 143 TGCAGATCATTGCCGGCATTTTTCTGATGCGCTCGGCAAATGAAGCGGGA 192
BSNT_05587___ 193 CAAATGGCTGAACA---CAAT-AGCGGACAGTCTGAAG--ACTTAATGCT 236
||.|||||.||.|| |||| |.|.||||| || ||.| |||||
RBAM_033780__ 193 CAGATGGCGGAGCAGTTCAATGAACTGACAG-----AGGAACAT-ATGCT 236
BSNT_05587___ 237 GGAGAATTACGCGAAATTCGTAAAGATGCAAGGGATTTATTTGATCGTAA 286
|||||||||.||.||.|||||.||.|||||.|||||.||..||||.||.|
RBAM_033780__ 237 GGAGAATTATGCAAAGTTCGTGAAAATGCAGGGGATCTACCTGATTGTGA 286
BSNT_05587___ 287 GCAT-TGCTGTATCCATTCTTGCGATTATCGCCT-TCTTCA---TCTTTT 331
..|| .||| |.|||.||||.|..|||.| | |||||| ||.|..
RBAM_033780__ 287 CGATCGGCT-TGTCCGTTCTCGGTATTGT----TCTCTTCATTGTCCTCA 331
BSNT_05587___ 332 TAATGCTTGGGATTGCTGATGGCCTTTTCAGCGATACGTA-------CAG 374
|.|.|||.||.||.|..||.|||.|.||.| ||| .|| ||.
RBAM_033780__ 332 TGACGCTCGGCATCGTGGACGGCGTGTTTA---ATA-ATATTGATGCCAA 377
BSNT_05587___ 375 CACTTATTAA 384
.||.||||||
RBAM_033780__ 378 TACATATTAA 387
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