Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05581 and RBAM_033740

See Amino acid alignment / Visit BSNT_05581 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:04
# Commandline: needle
#    -asequence dna-align/BSNT_05581___ywnH.1.9828.seq
#    -bsequence dna-align/RBAM_033740___ywnH.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05581___ywnH-RBAM_033740___ywnH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05581___ywnH-RBAM_033740___ywnH.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05581___ywnH
# 2: RBAM_033740___ywnH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 511
# Identity:     374/511 (73.2%)
# Similarity:   374/511 (73.2%)
# Gaps:          26/511 ( 5.1%)
# Score: 1289.5
# 
#
#=======================================

BSNT_05581___      1 ATGAACATGACATTGCGCCTTGCTGAACATAG--AGACTTGGAGGCTGTT     48
                     |||||..||||..|||||...||.|  .||.|  |||.||.||.||.||.
RBAM_033740__      1 ATGAATTTGACCCTGCGCAAAGCCG--TATTGGAAGATTTAGATGCGGTG     48

BSNT_05581___     49 GTGGCGATTTATAATTCAACGATTGCTTCTCGAATGGTAACAGCCGATAC     98
                     |||||.||.||.||.||.||||||||.||.||.||||||||.||.|||||
RBAM_033740__     49 GTGGCCATATACAACTCGACGATTGCCTCACGGATGGTAACGGCTGATAC     98

BSNT_05581___     99 CGAACCGGTAACTCCTGAAGACCGGATGGAATGGTTTTTAGGACATACAG    148
                     .|||...||.||.||.|.||||||||||||.||||||||..|.||.||.|
RBAM_033740__     99 GGAAGAAGTGACGCCCGCAGACCGGATGGATTGGTTTTTGCGGCACACGG    148

BSNT_05581___    149 A--GGCACGTCCGCTCTAT-GTGGCCGAGGACGAAAACGGAAACGTCGCT    195
                     |  ||  ||.||||| .|| ||.||.||.||.||||.|||.||.||.||.
RBAM_033740__    149 ACCGG--CGCCCGCT-GATGGTCGCGGAAGATGAAACCGGCAAAGTGGCG    195

BSNT_05581___    196 GCCTGGATCAGCTTTGAAACATTTTATGGAAGGCCAGCCTATAATAAAAC    245
                     ||||||||||||||||||||.|||||.||..|.||.||||||.|.|||||
RBAM_033740__    196 GCCTGGATCAGCTTTGAAACGTTTTACGGCCGTCCGGCCTATGACAAAAC    245

BSNT_05581___    246 AGCGGAGGTCAGCATATA----CATTGACGAAGCA-TGCCGCGGCAAAGG    290
                     .||||||.|||||||.||    |||     .||.| ||||||||||||||
RBAM_033740__    246 GGCGGAGATCAGCATCTATCTGCAT-----CAGGATTGCCGCGGCAAAGG    290

BSNT_05581___    291 CGTTGGATCATATTTGCTTCAGGAAGCGCTCCGCA-TTGCGCCG--GATC    337
                     .|..|||...|.|.||||..|.|||||.|| .||| |.||.|||  .|||
RBAM_033740__    291 AGCAGGAAGCTTTCTGCTGAAAGAAGCCCT-GGCACTCGCTCCGACAATC    339

BSNT_05581___    338 TTGGCATCCGCTCACTTATGGCCTTCATTTTCGGGCATAATAAACCAAGC    387
                       |||||||||...||.|||||.||.||.|||||.||||||...||.|||
RBAM_033740__    340 --GGCATCCGCAGCCTGATGGCTTTTATCTTCGGACATAATGTGCCGAGC    387

BSNT_05581___    388 CTGAAGCTGTTTGAAAAGCACGGGTTTGCAGAATGGGGACTATTCCCCGG    437
                     .|.||||||||||||||...|||.|||.|.||||||||..|||||||.||
RBAM_033740__    388 ATTAAGCTGTTTGAAAAATTCGGTTTTACCGAATGGGGCGTATTCCCGGG    437

BSNT_05581___    438 CATCGCCGAAATGGACGGGAAAAGATACGATTTAAAAATTTTAGGGAGAG    487
                     .|||||||||||||||||.|||.||||.||.||.||.|||||||||||||
RBAM_033740__    438 TATCGCCGAAATGGACGGAAAACGATATGACTTGAACATTTTAGGGAGAG    487

BSNT_05581___    488 AGCTTTCATGA    498
                     |.||.||||||
RBAM_033740__    488 AACTGTCATGA    498


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