Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05580 and RBAM_033730

See Amino acid alignment / Visit BSNT_05580 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:04
# Commandline: needle
#    -asequence dna-align/BSNT_05580___spoIIQ.1.9828.seq
#    -bsequence dna-align/RBAM_033730___spoIIQ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05580___spoIIQ-RBAM_033730___spoIIQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05580___spoIIQ-RBAM_033730___spoIIQ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05580___spoIIQ
# 2: RBAM_033730___spoIIQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 883
# Identity:     727/883 (82.3%)
# Similarity:   727/883 (82.3%)
# Gaps:          23/883 ( 2.6%)
# Score: 2968.0
# 
#
#=======================================

BSNT_05580___      1 ATGAGAGAGGAAGAAAAGAAAACTTCTCAAGTCAAAAAACTTCAGCAGTT     50
                     ||||||||||||||||||||||||||||||||||||||||||||||.|||
RBAM_033730__      1 ATGAGAGAGGAAGAAAAGAAAACTTCTCAAGTCAAAAAACTTCAGCGGTT     50

BSNT_05580___     51 TTTTCGTAAACGCTGGGTGTTCCCTGCAATTTACTTAGTCAGTGCGGCCG    100
                     ||||||.|||||||||.|.|||||||||||.|||||||||||||||||||
RBAM_033730__     51 TTTTCGCAAACGCTGGATATTCCCTGCAATCTACTTAGTCAGTGCGGCCG    100

BSNT_05580___    101 TCATTTTAACAGCTGTCCTTTGGTATCAATCAGTATCAAATGATGAGGTA    150
                     |||||||||||||||||||||||||||||||.||.||.||||||   ||.
RBAM_033730__    101 TCATTTTAACAGCTGTCCTTTGGTATCAATCCGTTTCGAATGAT---GTG    147

BSNT_05580___    151 AAGGATCAGT-TGGCTGATAACGGCGGAAACTCCGCATATGACA---ACA    196
                     ||||| ||.| ||.|..|.|||||||||||||||||.|||||||   .||
RBAM_033730__    148 AAGGA-CAATCTGACGAACAACGGCGGAAACTCCGCGTATGACAGCGGCA    196

BSNT_05580___    197 ACGACGATGCAGTTGAAGTAGGAAAGTCAATGGAAAATGTCGCAATGCCA    246
                     |.||||||||.||.||||||||.||||||||||||||.|||||||||||.
RBAM_033730__    197 AAGACGATGCCGTCGAAGTAGGCAAGTCAATGGAAAACGTCGCAATGCCG    246

BSNT_05580___    247 GTTGTTGATTCTGAAAACGTTTCTGTTGTGAAAAAGTTCTATGAAACCGA    296
                     |.||.|.||||||||||.||||||||||||||||||||.||||||||.||
RBAM_033730__    247 GCTGCTCATTCTGAAAATGTTTCTGTTGTGAAAAAGTTTTATGAAACTGA    296

BSNT_05580___    297 TGCCGCAAAAGAAGAGAAAGAAGCAGCACTCGTTACCTATAATAACACGT    346
                     ||||||||||.|||||||||||||||||||.||||.||||||||||||||
RBAM_033730__    297 TGCCGCAAAAAAAGAGAAAGAAGCAGCACTTGTTAACTATAATAACACGT    346

BSNT_05580___    347 ACAGCCTAAGCAAAGGAATTGACTTAGCTGAGAAAGACGGAAAA-GATTT    395
                     |||||||.||.||||||||||||||||||||||||||||||||| .||||
RBAM_033730__    347 ACAGCCTCAGTAAAGGAATTGACTTAGCTGAGAAAGACGGAAAATCATTT    396

BSNT_05580___    396 CGATGTCTCTGCTTCTCTGAGCGGTACGGTTGTTAAAGCTGAAAAAGATC    445
                      |||||.||||||||||||||||||||||||||||||||||..|||||.|
RBAM_033730__    397 -GATGTTTCTGCTTCTCTGAGCGGTACGGTTGTTAAAGCTGCTAAAGACC    445

BSNT_05580___    446 CAGTGCTGGGATATGTTGTGGAAGTAGAACATGCCGACGGTTTATCGACT    495
                     |.||.|||||||||||.||.|||.|.|||||..|.|||||..|.||.|||
RBAM_033730__    446 CGGTACTGGGATATGTGGTTGAAATTGAACACTCAGACGGCCTGTCTACT    495

BSNT_05580___    496 GTGTATCAATCTCTTTCCGAAGTAAGCGTTGAGCAAGGTGACAAAGTAAA    545
                     ||.|||||.|||.|.||.|||||.|||||.||.||.||.|||||||||||
RBAM_033730__    496 GTCTATCAGTCTTTATCTGAAGTCAGCGTGGATCAGGGCGACAAAGTAAA    545

BSNT_05580___    546 ACAAAATCAAGTGATCGGAAAATCTGGCAAGAACCTTTACAGTGAAGACA    595
                     .||.||.||.||.|||||.|||||.||.||.|||||||||||||||||.|
RBAM_033730__    546 GCAGAACCAGGTCATCGGTAAATCCGGAAAAAACCTTTACAGTGAAGAAA    595

BSNT_05580___    596 GCGGAAACCACGTACACTTTGAAATCCGTAAAGATGGGGTCGCAATGAAT    645
                     |||||||.|||||.||||||||||||||.||.||.||.||.||.|||||.
RBAM_033730__    596 GCGGAAATCACGTGCACTTTGAAATCCGCAAGGACGGCGTAGCGATGAAC    645

BSNT_05580___    646 CCGTTAAACTTTATGGACAAACCAGTTTCTTCTATTGAAAAAGCAGCAGC    695
                     |||.|.||.|||||||||||.||.||..|.||||||||||||||.||.||
RBAM_033730__    646 CCGCTCAATTTTATGGACAAGCCGGTAACATCTATTGAAAAAGCGGCGGC    695

BSNT_05580___    696 TGCTGAAGAAAAA-GCTGCCACCCAAGAAACAGAAGAATCAATTCAGCAA    744
                     ||..| ||||||| ||||..||..|||||||.||||..|||||||||||.
RBAM_033730__    696 TGAAG-AGAAAAACGCTGTGACAGAAGAAACGGAAGGGTCAATTCAGCAG    744

BSNT_05580___    745 TCTTCCGAGAAAAAGGACG-GATCAACTGAAAAAGGAACAGAAGAAAAAT    793
                     ||||||||||||||.||.| || |..||.||||||.|||.|||||||||.
RBAM_033730__    745 TCTTCCGAGAAAAAAGATGTGA-CGCCTAAAAAAGAAACCGAAGAAAAAC    793

BSNT_05580___    794 CCGGTGAGAAAAAGGATGATTCAACTGACAA---ATCTGGTTCCAAAGAA    840
                     |.|||||.|||.||||.|...|||..|||||   |..||||   |||||.
RBAM_033730__    794 CAGGTGACAAAGAGGACGGCACAAAAGACAAGACAGATGGT---AAAGAT    840

BSNT_05580___    841 AGCAGCACAACAGAAGACACTGAACAGTCTTAA    873
                     ..|.||.|||...||||..|.|...||   |||
RBAM_033730__    841 GACGGCTCAATGAAAGATTCGGGCAAG---TAA    870


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