Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05580 and RBAM_033730
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:04
# Commandline: needle
# -asequence dna-align/BSNT_05580___spoIIQ.1.9828.seq
# -bsequence dna-align/RBAM_033730___spoIIQ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05580___spoIIQ-RBAM_033730___spoIIQ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05580___spoIIQ-RBAM_033730___spoIIQ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05580___spoIIQ
# 2: RBAM_033730___spoIIQ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 883
# Identity: 727/883 (82.3%)
# Similarity: 727/883 (82.3%)
# Gaps: 23/883 ( 2.6%)
# Score: 2968.0
#
#
#=======================================
BSNT_05580___ 1 ATGAGAGAGGAAGAAAAGAAAACTTCTCAAGTCAAAAAACTTCAGCAGTT 50
||||||||||||||||||||||||||||||||||||||||||||||.|||
RBAM_033730__ 1 ATGAGAGAGGAAGAAAAGAAAACTTCTCAAGTCAAAAAACTTCAGCGGTT 50
BSNT_05580___ 51 TTTTCGTAAACGCTGGGTGTTCCCTGCAATTTACTTAGTCAGTGCGGCCG 100
||||||.|||||||||.|.|||||||||||.|||||||||||||||||||
RBAM_033730__ 51 TTTTCGCAAACGCTGGATATTCCCTGCAATCTACTTAGTCAGTGCGGCCG 100
BSNT_05580___ 101 TCATTTTAACAGCTGTCCTTTGGTATCAATCAGTATCAAATGATGAGGTA 150
|||||||||||||||||||||||||||||||.||.||.|||||| ||.
RBAM_033730__ 101 TCATTTTAACAGCTGTCCTTTGGTATCAATCCGTTTCGAATGAT---GTG 147
BSNT_05580___ 151 AAGGATCAGT-TGGCTGATAACGGCGGAAACTCCGCATATGACA---ACA 196
||||| ||.| ||.|..|.|||||||||||||||||.||||||| .||
RBAM_033730__ 148 AAGGA-CAATCTGACGAACAACGGCGGAAACTCCGCGTATGACAGCGGCA 196
BSNT_05580___ 197 ACGACGATGCAGTTGAAGTAGGAAAGTCAATGGAAAATGTCGCAATGCCA 246
|.||||||||.||.||||||||.||||||||||||||.|||||||||||.
RBAM_033730__ 197 AAGACGATGCCGTCGAAGTAGGCAAGTCAATGGAAAACGTCGCAATGCCG 246
BSNT_05580___ 247 GTTGTTGATTCTGAAAACGTTTCTGTTGTGAAAAAGTTCTATGAAACCGA 296
|.||.|.||||||||||.||||||||||||||||||||.||||||||.||
RBAM_033730__ 247 GCTGCTCATTCTGAAAATGTTTCTGTTGTGAAAAAGTTTTATGAAACTGA 296
BSNT_05580___ 297 TGCCGCAAAAGAAGAGAAAGAAGCAGCACTCGTTACCTATAATAACACGT 346
||||||||||.|||||||||||||||||||.||||.||||||||||||||
RBAM_033730__ 297 TGCCGCAAAAAAAGAGAAAGAAGCAGCACTTGTTAACTATAATAACACGT 346
BSNT_05580___ 347 ACAGCCTAAGCAAAGGAATTGACTTAGCTGAGAAAGACGGAAAA-GATTT 395
|||||||.||.||||||||||||||||||||||||||||||||| .||||
RBAM_033730__ 347 ACAGCCTCAGTAAAGGAATTGACTTAGCTGAGAAAGACGGAAAATCATTT 396
BSNT_05580___ 396 CGATGTCTCTGCTTCTCTGAGCGGTACGGTTGTTAAAGCTGAAAAAGATC 445
|||||.||||||||||||||||||||||||||||||||||..|||||.|
RBAM_033730__ 397 -GATGTTTCTGCTTCTCTGAGCGGTACGGTTGTTAAAGCTGCTAAAGACC 445
BSNT_05580___ 446 CAGTGCTGGGATATGTTGTGGAAGTAGAACATGCCGACGGTTTATCGACT 495
|.||.|||||||||||.||.|||.|.|||||..|.|||||..|.||.|||
RBAM_033730__ 446 CGGTACTGGGATATGTGGTTGAAATTGAACACTCAGACGGCCTGTCTACT 495
BSNT_05580___ 496 GTGTATCAATCTCTTTCCGAAGTAAGCGTTGAGCAAGGTGACAAAGTAAA 545
||.|||||.|||.|.||.|||||.|||||.||.||.||.|||||||||||
RBAM_033730__ 496 GTCTATCAGTCTTTATCTGAAGTCAGCGTGGATCAGGGCGACAAAGTAAA 545
BSNT_05580___ 546 ACAAAATCAAGTGATCGGAAAATCTGGCAAGAACCTTTACAGTGAAGACA 595
.||.||.||.||.|||||.|||||.||.||.|||||||||||||||||.|
RBAM_033730__ 546 GCAGAACCAGGTCATCGGTAAATCCGGAAAAAACCTTTACAGTGAAGAAA 595
BSNT_05580___ 596 GCGGAAACCACGTACACTTTGAAATCCGTAAAGATGGGGTCGCAATGAAT 645
|||||||.|||||.||||||||||||||.||.||.||.||.||.|||||.
RBAM_033730__ 596 GCGGAAATCACGTGCACTTTGAAATCCGCAAGGACGGCGTAGCGATGAAC 645
BSNT_05580___ 646 CCGTTAAACTTTATGGACAAACCAGTTTCTTCTATTGAAAAAGCAGCAGC 695
|||.|.||.|||||||||||.||.||..|.||||||||||||||.||.||
RBAM_033730__ 646 CCGCTCAATTTTATGGACAAGCCGGTAACATCTATTGAAAAAGCGGCGGC 695
BSNT_05580___ 696 TGCTGAAGAAAAA-GCTGCCACCCAAGAAACAGAAGAATCAATTCAGCAA 744
||..| ||||||| ||||..||..|||||||.||||..|||||||||||.
RBAM_033730__ 696 TGAAG-AGAAAAACGCTGTGACAGAAGAAACGGAAGGGTCAATTCAGCAG 744
BSNT_05580___ 745 TCTTCCGAGAAAAAGGACG-GATCAACTGAAAAAGGAACAGAAGAAAAAT 793
||||||||||||||.||.| || |..||.||||||.|||.|||||||||.
RBAM_033730__ 745 TCTTCCGAGAAAAAAGATGTGA-CGCCTAAAAAAGAAACCGAAGAAAAAC 793
BSNT_05580___ 794 CCGGTGAGAAAAAGGATGATTCAACTGACAA---ATCTGGTTCCAAAGAA 840
|.|||||.|||.||||.|...|||..||||| |..|||| |||||.
RBAM_033730__ 794 CAGGTGACAAAGAGGACGGCACAAAAGACAAGACAGATGGT---AAAGAT 840
BSNT_05580___ 841 AGCAGCACAACAGAAGACACTGAACAGTCTTAA 873
..|.||.|||...||||..|.|...|| |||
RBAM_033730__ 841 GACGGCTCAATGAAAGATTCGGGCAAG---TAA 870
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