Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05559 and RBAM_033600

See Amino acid alignment / Visit BSNT_05559 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:02
# Commandline: needle
#    -asequence dna-align/BSNT_05559___flhO.1.9828.seq
#    -bsequence dna-align/RBAM_033600___flhO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05559___flhO-RBAM_033600___flhO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05559___flhO-RBAM_033600___flhO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05559___flhO
# 2: RBAM_033600___flhO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 827
# Identity:     641/827 (77.5%)
# Similarity:   641/827 (77.5%)
# Gaps:          43/827 ( 5.2%)
# Score: 2545.0
# 
#
#=======================================

BSNT_05559___      1 TTGTTAAAAGGATTATATACAGCAACATCCGCAATGATTGCCCAGCAGCG     50
                     ||||||||||||||||||||.|||||.||||||||||||.|.||||||.|
RBAM_033600__      1 TTGTTAAAAGGATTATATACCGCAACGTCCGCAATGATTACACAGCAGAG     50

BSNT_05559___     51 AAGAACGGAAATGCTTTCAAATAATATTGCTAACGCAAATACATCAGGAT    100
                     |||||||||||||||.||||||||.||.||.|||||.|||||||||||.|
RBAM_033600__     51 AAGAACGGAAATGCTGTCAAATAACATCGCAAACGCGAATACATCAGGGT    100

BSNT_05559___    101 ATAAAGCTGATCAAGGCTCGATGCGCGCGTTCCCTGAAATGCTGCTCAGC    150
                     |.||||..||||||||.||.||.|||||.||.||.||.|||||.||.|||
RBAM_033600__    101 ACAAAGAGGATCAAGGTTCAATCCGCGCCTTTCCCGAGATGCTTCTGAGC    150

BSNT_05559___    151 AGAATAGA-----ATCAAAATCTCCGGCCGGGACATCGAGGACGGAAATC    195
                     .|||||||     ||.||||                    .|||.|||||
RBAM_033600__    151 CGAATAGAAGGCGATAAAAA--------------------AACGAAAATC    180

BSNT_05559___    196 GGTTCCGTGAATACCGGAGTATATATGCAGGAGCTTAAGCCTCTCTTTAC    245
                     ||||||||.||.||.||.|||||.|||||||||||.||.||..|.|||||
RBAM_033600__    181 GGTTCCGTCAACACAGGCGTATACATGCAGGAGCTGAAACCGTTGTTTAC    230

BSNT_05559___    246 ACAGGGAAGCCTGAAGTCCACAGACCAGCCTATAGACATTGCATTGATCG    295
                     .||||||||||||||..|.||.||.|||||.|..||.||.||..||||.|
RBAM_033600__    231 GCAGGGAAGCCTGAAAACGACCGATCAGCCGACGGATATCGCGCTGATGG    280

BSNT_05559___    296 AAAATCAAGTTCCGATGAATGCGGAAACCAATGAAAACGCGGCTCTTTTT    345
                     |.|||||.|||||.|.||||||.|||||.|||||||||||.|..||.|||
RBAM_033600__    281 AGAATCAGGTTCCCAAGAATGCCGAAACGAATGAAAACGCCGAGCTGTTT    330

BSNT_05559___    346 TATCCGGTTCAAACAGCGGATGGAATCCGTTACTCAAAAAGCAGCACATT    395
                     |||||.||.||.||.||.|..||..||||.||.||||||||||||||.||
RBAM_033600__    331 TATCCCGTGCAGACCGCAGGCGGCGTCCGCTATTCAAAAAGCAGCACTTT    380

BSNT_05559___    396 TTCATTAAATGAGAACAATCAACTGACGATCAACGGACGCCCTGTTTTAT    445
                     .|||||||||||.||||||||.||.|||||.||||||..||.|||.||||
RBAM_033600__    381 CTCATTAAATGAAAACAATCAGCTTACGATAAACGGAAACCTTGTGTTAT    430

BSNT_05559___    446 C----GACGGATCGCCAGCCAATCACTGTTGATAATGAGAATTTCACTGT    491
                     |    .|||||    |||||.||.||.||.||.|||||.||.|||||.||
RBAM_033600__    431 CAACAAACGGA----CAGCCGATTACAGTCGACAATGAAAAATTCACCGT    476

BSNT_05559___    492 GTCTGAAAACGGTACTGTGACAACGAACGGACGGACAGCCGGCCAGATTG    541
                     .||.||||||||.||.||.||.||.|||||.|||.|.||.||.|||||||
RBAM_033600__    477 ATCAGAAAACGGAACGGTCACGACAAACGGCCGGCCGGCGGGGCAGATTG    526

BSNT_05559___    542 ATGTCAGAATGGCGGAAGATGTCCGCAATCTCAAACGGGACGGAAATGAT    591
                     ||.|||||||||..|||||.||.||||||||.|||||||||||.|||||.
RBAM_033600__    527 ATATCAGAATGGAAGAAGACGTGCGCAATCTGAAACGGGACGGCAATGAC    576

BSNT_05559___    592 TTGTACAGCACGGCGGACGGTAATGATCTGCCAAGCGCAGC--CGGAAAC    639
                     .|.|||||||||||.|||||...|||.|||||.|||||.||  ||     
RBAM_033600__    577 CTATACAGCACGGCCGACGGCTCTGAACTGCCGAGCGCGGCGGCG-----    621

BSNT_05559___    640 AAT---CAGGTATCTTATTCATTAAAACAAGGCGTCTCAGAGCTTTCAAA    686
                     |||   ||.||.||.|||||||||||.|||||||||||.||||||||.||
RBAM_033600__    622 AATCCCCAAGTCTCGTATTCATTAAAGCAAGGCGTCTCGGAGCTTTCGAA    671

BSNT_05559___    687 CGTGGATGTGACAAGCGCCTATACAGAAATGACTGAAGCGTACAGATCGT    736
                     ||||||.|||||.|||.|.||||||||||||||.|||||.||||||||.|
RBAM_033600__    672 CGTGGACGTGACGAGCACGTATACAGAAATGACGGAAGCATACAGATCAT    721

BSNT_05559___    737 TTGAGGCCAATCAGAAGGTTATTCAGGCTTACGATAAAAGTATGGATAAA    786
                     ||||.||||||||.||.||.||||||||||||||||||||.|||||||||
RBAM_033600__    722 TTGAAGCCAATCAAAAAGTCATTCAGGCTTACGATAAAAGCATGGATAAA    771

BSNT_05559___    787 GCAGCAAATGAGATCGGAAAAATTTAA    813
                     ||.||||||||.|||||.|||.|.|||
RBAM_033600__    772 GCCGCAAATGAAATCGGCAAAGTGTAA    798


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