Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05557 and RBAM_033590

See Amino acid alignment / Visit BSNT_05557 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:02
# Commandline: needle
#    -asequence dna-align/BSNT_05557___flhP.1.9828.seq
#    -bsequence dna-align/RBAM_033590___flhP.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05557___flhP-RBAM_033590___flhP.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05557___flhP-RBAM_033590___flhP.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05557___flhP
# 2: RBAM_033590___flhP
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 862
# Identity:     589/862 (68.3%)
# Similarity:   589/862 (68.3%)
# Gaps:          92/862 (10.7%)
# Score: 1947.0
# 
#
#=======================================

BSNT_05557___      1 ATGCTTAGGTCAATGCTAACGGCATCAACAACCTTAAACCAGCTGCAGCA     50
                     |||||.||.||||||||.|||||.||||||.|||||.|.|||||.|||||
RBAM_033590__      1 ATGCTCAGATCAATGCTGACGGCTTCAACAGCCTTACATCAGCTTCAGCA     50

BSNT_05557___     51 GCAGATTGACACTATCAGCAGCAACCTTTCAAACAGCAACACAACCGGCT    100
                     ||||||.||.||..||||||||||||||||||||||..|.||.||.||||
RBAM_033590__     51 GCAGATGGATACAGTCAGCAGCAACCTTTCAAACAGTGATACGACAGGCT    100

BSNT_05557___    101 ATAAGGCAAAAGATACGAATTTTTCTGAGCTTGTCAGACAGCAATTCGAT    150
                     ||||.||.|..||..|....|||||.|||||..||||||||||.|..||.
RBAM_033590__    101 ATAAAGCGAGGGACTCCCGCTTTTCCGAGCTGATCAGACAGCAGTATGAC    150

BSNT_05557___    151 CAGGTTGATGAAAAAAACGAGGAAGTGGCAAAA---GCC-------CGAA    190
                     ||..|.|||||.|||||          |.||||   |||       ||.|
RBAM_033590__    151 CATATAGATGACAAAAA----------GGAAAATTCGCCGAACATGCGGA    190

BSNT_05557___    191 AAACGCCGCCCGGCTTACGCCTTGGCGTCGGAGCGATGATGAATTCACGC    240
                     |||||||||||||..|.||.||.||||.||||.||.|.||||.|.|.|..
RBAM_033590__    191 AAACGCCGCCCGGTCTGCGTCTCGGCGCCGGAACGGTCATGACTCCGCAG    240

BSNT_05557___    241 CTGGTCTCTGATCAAGGAAGCATTCAGAAGACCGATCGCGATCTGGATAT    290
                     ||||.|||.|..||.||||||||..|.||.|||||.||.||.||.|||||
RBAM_033590__    241 CTGGACTCAGGGCAGGGAAGCATCAAAAAAACCGACCGTGACCTTGATAT    290

BSNT_05557___    291 CGCATTTACGTCTCCATACCAGTATCTTCAGGTAAATGTAAATGGAAACC    340
                     |||.||.||.||.||.||.||.||||||||||.|.|.|...|.|||...|
RBAM_033590__    291 CGCGTTCACATCACCTTATCAATATCTTCAGGCAGAAGCGGACGGACGGC    340

BSNT_05557___    341 GCCAGTATACGAGGGACGGGGCGCTGTATGTAACGCCGTCCGCTGCG--A    388
                     |...||||||.||||||||..|.||.|...|.|.||||.|||  |||  |
RBAM_033590__    341 GGGTGTATACAAGGGACGGCTCACTTTCCCTCAAGCCGGCCG--GCGGAA    388

BSNT_05557___    389 ATGCCAACCAGCTG---CAGCTCGTCA---CTGGAAATGGGTATCCCGTA    432
                     |||   |||.||||   |||||..|.|   |.|||   ||..|||||.|.
RBAM_033590__    389 ATG---ACCGGCTGCTTCAGCTGATGACAGCGGGA---GGCAATCCCATT    432

BSNT_05557___    433 CTTGATGAGAACGG-----CAATACAGTGAACATCGACAGCTCAATGA--    475
                     ||.|||||||||||     |.||||     |.||.|||||.||..|||  
RBAM_033590__    433 CTCGATGAGAACGGTCAGCCCATAC-----AAATTGACAGTTCGCTGACT    477

BSNT_05557___    476 ----AGAATATCACCATCAATAAGAACGGCACCTTAACCGCATCTGA---    518
                         .|||.||||.|      ||.|.|||.||..|.||.||.||.||   
RBAM_033590__    478 CAGCTGAAAATCAGC------AAAACCGGAACGCTGACTGCTTCAGACCA    521

BSNT_05557___    519 --CGGAAACGCGGTT--CAGCGGTTTAATCTTGGCGTTGTCCAAGTGAAT    564
                       |||.||| |.|||  |||..|||||||||.|||.|.|||.|.||.|||
RBAM_033590__    522 GGCGGGAAC-CCGTTCGCAGACGTTTAATCTCGGCATCGTCAATGTCAAT    570

BSNT_05557___    565 AACCCTCAAGAGCTGAAATCCGAAGGGAATAACC--TTTTCTCTATTGAT    612
                     ||.||.||.|.|||..|..|.||||||.||||.|  |||||..||     
RBAM_033590__    571 AATCCGCAGGCGCTTCATGCGGAAGGGGATAATCTGTTTTCCGTA-----    615

BSNT_05557___    613 AA---TGCGG------CAGCTTTTGAAGAGCTAAACGGCGCTAA----TA    649
                     ||   .||||      ||||..||||||||||.|.||||||.||    .|
RBAM_033590__    616 AACGGCGCGGGGGCTTCAGCGATTGAAGAGCTTACCGGCGCAAACCGGCA    665

BSNT_05557___    650 GACAAAACATCGGCATGCAGCAGGGCTCACTTGAGATG-TCCAATGTCGA    698
                     |.||    |||||||||.||||||||.|.||||| |.| ||.||||||||
RBAM_033590__    666 GGCA----ATCGGCATGGAGCAGGGCGCGCTTGA-AGGTTCAAATGTCGA    710

BSNT_05557___    699 TATTTCAGAACAAATGACAGATTTGATCACGTCCCAGCGTTCATATCAGC    748
                     |||.|||.||.|||||||.|..||.|||..|||.||||||||.|||||||
RBAM_033590__    711 TATGTCAAAAGAAATGACCGGCTTAATCGTGTCTCAGCGTTCCTATCAGC    760

BSNT_05557___    749 TGAACAGCAGAACGATCACAATGGGAGATCAAATGCTCGGTTTAATCAAT    798
                     ||||||||.|.|||||.|||.|||||||.||||||||.||.||||||||.
RBAM_033590__    761 TGAACAGCCGCACGATTACATTGGGAGACCAAATGCTGGGCTTAATCAAC    810

BSNT_05557___    799 TCAGTCAGATAA    810
                     ||||||||||||
RBAM_033590__    811 TCAGTCAGATAA    822


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05557 and RBAM_033590

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
