Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05555 and RBAM_033580
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:02
# Commandline: needle
# -asequence dna-align/BSNT_05555___rapD.1.9828.seq
# -bsequence dna-align/RBAM_033580___rapD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05555___rapD-RBAM_033580___rapD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05555___rapD-RBAM_033580___rapD.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05555___rapD
# 2: RBAM_033580___rapD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1134
# Identity: 770/1134 (67.9%)
# Similarity: 770/1134 (67.9%)
# Gaps: 138/1134 (12.2%)
# Score: 2478.0
#
#
#=======================================
BSNT_05555___ 1 ATGATTTCGAAGTTTATTGAAAAAAGAATGCTAAACATGTTAGACGAGTG 50
||||||.|.|||||||.|||||||.|.|.|||.|..|||.|..|.|||||
RBAM_033580__ 1 ATGATTGCTAAGTTTACTGAAAAACGTACGCTGATGATGCTGAATGAGTG 50
BSNT_05555___ 51 GTATTCCGCAATGAGCAAACGCAAA----ATGAATCACGTTTGCACACTG 96
||||...||.|||.|.||||||.|| ||..|.|.|||| |.||.
RBAM_033580__ 51 GTATGATGCCATGGGAAAACGCCAATTCGATCTAGCCCGTT----CCCTT 96
BSNT_05555___ 97 AAAGAGAAAATTGACCAGCACCTTCCAAAGATCA-AAAAGAACACAAAAC 145
.|.||..||||..|.|||||.||.||.|| ||.| |||||||..||||.|
RBAM_033580__ 97 CACGAACAAATCAATCAGCATCTCCCCAA-ATTACAAAAGAATGCAAAGC 145
BSNT_05555___ 146 T-----TTGGATGCGTTATCAATTGTTTCAGGCCCGCCATCAGCTGCTTT 190
| |..|| |||||..|||||...||.||...|||||||||.|
RBAM_033580__ 146 TCAAACTCAGA-----TATCAGCTGTTTTTCGCACGGTTTCAGCTGCTGT 190
BSNT_05555___ 191 TTGA-AAACCAGAACGGACTCGATTCA-TTGTTCGATGACCTATATGGCC 238
|||| |||..|| ||||.|| ||.|.| .|||||...||.||..| ||
RBAM_033580__ 191 TTGAGAAAAAAG-ACGGTCT-GAATAAGCTGTTCTGCGAGCTGAA--GC- 235
BSNT_05555___ 239 TGG----AAGACAAAATGGATGATGAATTGAAATATTATCTGTATTTTTT 284
|| ||||..|.||||||.|||||||.|..||||||.|.||||||||
RBAM_033580__ 236 -GGCGCAAAGATGAGATGGATCATGAATTAACTTATTATTTCTATTTTTT 284
BSNT_05555___ 285 CTCTGGGTTATATGAGATGGTAAAAACAGCTCCGAAACATGCAGTACATC 334
|...|||||||...|.|||||.||....||||||||.|.|||.||....|
RBAM_033580__ 285 CAAAGGGTTATTCCATATGGTGAATGGCGCTCCGAACCGTGCTGTCTGCC 334
BSNT_05555___ 335 ATTTTAAAAAAGCTGAACAGTACCTGGCCGCCATTCAAAATACGTTT-GA 383
..||||||.|||||||||||||||||.|.||||||||..| .||||| ||
RBAM_033580__ 335 GCTTTAAAGAAGCTGAACAGTACCTGCCGGCCATTCAGGA-CCGTTTCGA 383
BSNT_05555___ 384 AGCCGCTGATTTATATTATCAAACCGCCGGCGCCTATTACTTGATGAAAT 433
|||||||||.||.||||||.||||.||.||.||.||||||.|||||||.|
RBAM_033580__ 384 AGCCGCTGAATTTTATTATAAAACAGCGGGTGCATATTACATGATGAAGT 433
BSNT_05555___ 434 CACCGCCGCTTTCCATCCAATACGTCAAAAAAGCATTACACATCTAT--- 480
|.||..||||.|||||.|||||.|||||.|||||..|..|.||||||
RBAM_033580__ 434 CGCCTGCGCTCTCCATTCAATATGTCAATAAAGCGCTGGAAATCTATCAA 483
BSNT_05555___ 481 -TTGCACCAATTCGGCTATATCAAAAAGGTAA---TCACCTGTAAGCTTT 526
.|| ||..||||||.|||||||| || |||.|||...|||..
RBAM_033580__ 484 GATG----AAGCCGGCTACATCAAAAA---AACGCTCAGCTGCCGGCTGC 526
BSNT_05555___ 527 TGCTCGCCGTGAATTATATTGATCAAGAACGCTATGAAAAAGCTGAACAG 576
|.|||||||||||||||||.||..|.|.|||||||||..|.||.||||||
RBAM_033580__ 527 TTCTCGCCGTGAATTATATAGACGAGGCACGCTATGACGACGCAGAACAG 576
BSNT_05555___ 577 CTTTTCAAAGAAATCATTAAGAAAAC---CC--AGCAACTACATGACGAA 621
||.|||||.|||..|||.||||.||| || |.|| |||||.|.
RBAM_033580__ 577 CTCTTCAATGAATCCATAAAGATAACGGACCGGATCA-----ATGACAAT 621
BSNT_05555___ 622 AACCTGCTATGCCACGCTTATTATAACCTTGGCTTTTTAAAAGCGACCG- 670
||||||||.||||||||.||||||||..||||.|||||||| |||||
RBAM_033580__ 622 AACCTGCTGTGCCACGCCTATTATAATTTTGGTTTTTTAAA---GACCGC 668
BSNT_05555___ 671 --AGAAAAAAGACCAGGAAGCGCTTCTTTACTTTAGAAAA--GTATTAAA 716
||||||||||..|.||.||.||.|.|| ||||.|||| |||||...
RBAM_033580__ 669 CCAGAAAAAAGATAAAGAGGCCCTCCCTT--TTTACAAAAAGGTATTGGG 716
BSNT_05555___ 717 GAATCAAGAATTT---GAAATGAATTCACCAGTCTCATATCTTCATTGTG 763
.|||| ||..||| |||| .|.||.||.||.||.||.||.|||||||
RBAM_033580__ 717 CAATC-AGCGTTTCGAGAAA--GAGTCTCCCGTTTCCTACCTGCATTGTG 763
BSNT_05555___ 764 TGTACGAGTCTGTCAGAGCGCTTTTTAAAACAGGGAACAT----CACAGA 809
|.|||||..|.||||||||.|||||||||||.|| || |.|.||
RBAM_033580__ 764 TATACGAAGCGGTCAGAGCACTTTTTAAAACCGG----ATCTGCCGCCGA 809
BSNT_05555___ 810 AGCTAAAGCCGTCCTTCAAAAAGGAAAAGAATTATCTGAAAAGGT--AGA 857
||...||.||||.||.||.|||||...|.|..||||||||||.|| ||
RBAM_033580__ 810 AGGACAAACCGTGCTGCAGAAAGGTTTATACATATCTGAAAAAGTGCAG- 858
BSNT_05555___ 858 CATTCAAACCATTTATTTAAAATTA--AAAACGCTTGAAGC---CC---- 898
||| ||.|||| ||| ||||||| ||
RBAM_033580__ 859 ------AAC---------AAGATTATGAAA----TTGAAGCTGACCGCGC 889
BSNT_05555___ 899 ---------TCTACAC--CTCAGTGGAAGATCCCTATGA------GCAGC 931
|.||||| |||| |||.||.||.||.|| ||||.
RBAM_033580__ 890 TCAACATATTGTACACCGCTCA--GGAGGACCCGTACGACCGATTGCAGA 937
BSNT_05555___ 932 TGCTCGAATATGTGCTTGAATTAGAAAAAATCGAGGCGTGGGTGGATTTA 981
.||| ||||||.||..|..|.|||||.||.||||||||||||||.
RBAM_033580__ 938 AGCT------TGTGCTGGAGCTGCAGAAAATTGAAGCGTGGGTGGATTTG 981
BSNT_05555___ 982 GAAGTGCTGTTAGAAGATATTACGGAATACTACAAAAAAAAGGACGATTT 1031
|||||||||.|..|.||||||||.||.||||||||||||||||.||||||
RBAM_033580__ 982 GAAGTGCTGCTTCAGGATATTACTGATTACTACAAAAAAAAGGGCGATTT 1031
BSNT_05555___ 1032 CGAAAAAGCCGCTTTTTTTATCATGCGCGGCTGA 1065
.||.||||||||.|||||||||||||||||||||
RBAM_033580__ 1032 TGAGAAAGCCGCATTTTTTATCATGCGCGGCTGA 1065
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