Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05555 and RBAM_033580

See Amino acid alignment / Visit BSNT_05555 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:02
# Commandline: needle
#    -asequence dna-align/BSNT_05555___rapD.1.9828.seq
#    -bsequence dna-align/RBAM_033580___rapD.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05555___rapD-RBAM_033580___rapD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05555___rapD-RBAM_033580___rapD.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05555___rapD
# 2: RBAM_033580___rapD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1134
# Identity:     770/1134 (67.9%)
# Similarity:   770/1134 (67.9%)
# Gaps:         138/1134 (12.2%)
# Score: 2478.0
# 
#
#=======================================

BSNT_05555___      1 ATGATTTCGAAGTTTATTGAAAAAAGAATGCTAAACATGTTAGACGAGTG     50
                     ||||||.|.|||||||.|||||||.|.|.|||.|..|||.|..|.|||||
RBAM_033580__      1 ATGATTGCTAAGTTTACTGAAAAACGTACGCTGATGATGCTGAATGAGTG     50

BSNT_05555___     51 GTATTCCGCAATGAGCAAACGCAAA----ATGAATCACGTTTGCACACTG     96
                     ||||...||.|||.|.||||||.||    ||..|.|.||||    |.||.
RBAM_033580__     51 GTATGATGCCATGGGAAAACGCCAATTCGATCTAGCCCGTT----CCCTT     96

BSNT_05555___     97 AAAGAGAAAATTGACCAGCACCTTCCAAAGATCA-AAAAGAACACAAAAC    145
                     .|.||..||||..|.|||||.||.||.|| ||.| |||||||..||||.|
RBAM_033580__     97 CACGAACAAATCAATCAGCATCTCCCCAA-ATTACAAAAGAATGCAAAGC    145

BSNT_05555___    146 T-----TTGGATGCGTTATCAATTGTTTCAGGCCCGCCATCAGCTGCTTT    190
                     |     |..||     |||||..|||||...||.||...|||||||||.|
RBAM_033580__    146 TCAAACTCAGA-----TATCAGCTGTTTTTCGCACGGTTTCAGCTGCTGT    190

BSNT_05555___    191 TTGA-AAACCAGAACGGACTCGATTCA-TTGTTCGATGACCTATATGGCC    238
                     |||| |||..|| ||||.|| ||.|.| .|||||...||.||..|  || 
RBAM_033580__    191 TTGAGAAAAAAG-ACGGTCT-GAATAAGCTGTTCTGCGAGCTGAA--GC-    235

BSNT_05555___    239 TGG----AAGACAAAATGGATGATGAATTGAAATATTATCTGTATTTTTT    284
                      ||    ||||..|.||||||.|||||||.|..||||||.|.||||||||
RBAM_033580__    236 -GGCGCAAAGATGAGATGGATCATGAATTAACTTATTATTTCTATTTTTT    284

BSNT_05555___    285 CTCTGGGTTATATGAGATGGTAAAAACAGCTCCGAAACATGCAGTACATC    334
                     |...|||||||...|.|||||.||....||||||||.|.|||.||....|
RBAM_033580__    285 CAAAGGGTTATTCCATATGGTGAATGGCGCTCCGAACCGTGCTGTCTGCC    334

BSNT_05555___    335 ATTTTAAAAAAGCTGAACAGTACCTGGCCGCCATTCAAAATACGTTT-GA    383
                     ..||||||.|||||||||||||||||.|.||||||||..| .||||| ||
RBAM_033580__    335 GCTTTAAAGAAGCTGAACAGTACCTGCCGGCCATTCAGGA-CCGTTTCGA    383

BSNT_05555___    384 AGCCGCTGATTTATATTATCAAACCGCCGGCGCCTATTACTTGATGAAAT    433
                     |||||||||.||.||||||.||||.||.||.||.||||||.|||||||.|
RBAM_033580__    384 AGCCGCTGAATTTTATTATAAAACAGCGGGTGCATATTACATGATGAAGT    433

BSNT_05555___    434 CACCGCCGCTTTCCATCCAATACGTCAAAAAAGCATTACACATCTAT---    480
                     |.||..||||.|||||.|||||.|||||.|||||..|..|.||||||   
RBAM_033580__    434 CGCCTGCGCTCTCCATTCAATATGTCAATAAAGCGCTGGAAATCTATCAA    483

BSNT_05555___    481 -TTGCACCAATTCGGCTATATCAAAAAGGTAA---TCACCTGTAAGCTTT    526
                      .||    ||..||||||.||||||||   ||   |||.|||...|||..
RBAM_033580__    484 GATG----AAGCCGGCTACATCAAAAA---AACGCTCAGCTGCCGGCTGC    526

BSNT_05555___    527 TGCTCGCCGTGAATTATATTGATCAAGAACGCTATGAAAAAGCTGAACAG    576
                     |.|||||||||||||||||.||..|.|.|||||||||..|.||.||||||
RBAM_033580__    527 TTCTCGCCGTGAATTATATAGACGAGGCACGCTATGACGACGCAGAACAG    576

BSNT_05555___    577 CTTTTCAAAGAAATCATTAAGAAAAC---CC--AGCAACTACATGACGAA    621
                     ||.|||||.|||..|||.||||.|||   ||  |.||     |||||.|.
RBAM_033580__    577 CTCTTCAATGAATCCATAAAGATAACGGACCGGATCA-----ATGACAAT    621

BSNT_05555___    622 AACCTGCTATGCCACGCTTATTATAACCTTGGCTTTTTAAAAGCGACCG-    670
                     ||||||||.||||||||.||||||||..||||.||||||||   ||||| 
RBAM_033580__    622 AACCTGCTGTGCCACGCCTATTATAATTTTGGTTTTTTAAA---GACCGC    668

BSNT_05555___    671 --AGAAAAAAGACCAGGAAGCGCTTCTTTACTTTAGAAAA--GTATTAAA    716
                       ||||||||||..|.||.||.||.|.||  ||||.||||  |||||...
RBAM_033580__    669 CCAGAAAAAAGATAAAGAGGCCCTCCCTT--TTTACAAAAAGGTATTGGG    716

BSNT_05555___    717 GAATCAAGAATTT---GAAATGAATTCACCAGTCTCATATCTTCATTGTG    763
                     .|||| ||..|||   ||||  .|.||.||.||.||.||.||.|||||||
RBAM_033580__    717 CAATC-AGCGTTTCGAGAAA--GAGTCTCCCGTTTCCTACCTGCATTGTG    763

BSNT_05555___    764 TGTACGAGTCTGTCAGAGCGCTTTTTAAAACAGGGAACAT----CACAGA    809
                     |.|||||..|.||||||||.|||||||||||.||    ||    |.|.||
RBAM_033580__    764 TATACGAAGCGGTCAGAGCACTTTTTAAAACCGG----ATCTGCCGCCGA    809

BSNT_05555___    810 AGCTAAAGCCGTCCTTCAAAAAGGAAAAGAATTATCTGAAAAGGT--AGA    857
                     ||...||.||||.||.||.|||||...|.|..||||||||||.||  || 
RBAM_033580__    810 AGGACAAACCGTGCTGCAGAAAGGTTTATACATATCTGAAAAAGTGCAG-    858

BSNT_05555___    858 CATTCAAACCATTTATTTAAAATTA--AAAACGCTTGAAGC---CC----    898
                           |||         ||.||||  |||    |||||||   ||    
RBAM_033580__    859 ------AAC---------AAGATTATGAAA----TTGAAGCTGACCGCGC    889

BSNT_05555___    899 ---------TCTACAC--CTCAGTGGAAGATCCCTATGA------GCAGC    931
                              |.|||||  ||||  |||.||.||.||.||      ||||.
RBAM_033580__    890 TCAACATATTGTACACCGCTCA--GGAGGACCCGTACGACCGATTGCAGA    937

BSNT_05555___    932 TGCTCGAATATGTGCTTGAATTAGAAAAAATCGAGGCGTGGGTGGATTTA    981
                     .|||      ||||||.||..|..|.|||||.||.||||||||||||||.
RBAM_033580__    938 AGCT------TGTGCTGGAGCTGCAGAAAATTGAAGCGTGGGTGGATTTG    981

BSNT_05555___    982 GAAGTGCTGTTAGAAGATATTACGGAATACTACAAAAAAAAGGACGATTT   1031
                     |||||||||.|..|.||||||||.||.||||||||||||||||.||||||
RBAM_033580__    982 GAAGTGCTGCTTCAGGATATTACTGATTACTACAAAAAAAAGGGCGATTT   1031

BSNT_05555___   1032 CGAAAAAGCCGCTTTTTTTATCATGCGCGGCTGA   1065
                     .||.||||||||.|||||||||||||||||||||
RBAM_033580__   1032 TGAGAAAGCCGCATTTTTTATCATGCGCGGCTGA   1065


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