Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05553 and RBAM_033560
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:02
# Commandline: needle
# -asequence dna-align/BSNT_05553.1.9828.seq
# -bsequence dna-align/RBAM_033560___mscL.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05553-RBAM_033560___mscL.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05553-RBAM_033560___mscL.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05553
# 2: RBAM_033560___mscL
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 487
# Identity: 299/487 (61.4%)
# Similarity: 299/487 (61.4%)
# Gaps: 110/487 (22.6%)
# Score: 1071.0
#
#
#=======================================
BSNT_05553 1 TTGAAAAAAGGCAAATGGCCAGCGGCACATTTGTCTTTTTTTCTTTACAA 50
RBAM_033560__ 0 -------------------------------------------------- 0
BSNT_05553 51 ATATAGAAAAGCAGGTGATTGTATGTGGAATGAATTTAAAGCCTTTGCCA 100
||||||...|||||||||..||||||.|
RBAM_033560__ 1 ----------------------ATGTGGTCAGAATTTAAAAGCTTTGCGA 28
BSNT_05553 101 TGCGGGGGAATATCGTAGACCTTGCGATTGGTGTTGTGATAGGCGGCGCT 150
|||||||.||||||.|.||.||.||.||.|||||.||.||.|||||||||
RBAM_033560__ 29 TGCGGGGCAATATCATGGATCTGGCTATCGGTGTCGTCATCGGCGGCGCT 78
BSNT_05553 151 TTCGGAAAGATCGTCACATCTCTAGTAAATGATATCATTATGCCTTTGGT 200
|||||.||.|||||.||.||.||.||..|.||.|||||.|||||..||||
RBAM_033560__ 79 TTCGGCAAAATCGTGACGTCGCTCGTTGAAGACATCATCATGCCGCTGGT 128
BSNT_05553 201 CGGTTTGCTGCTGGGAGGGCTTGACTTTTCAGGCCTGTCGTTTACGTTTG 250
|||..||||.||.||.||.||||||||||||||.|||.|..|.||.||.|
RBAM_033560__ 129 CGGACTGCTTCTTGGCGGTCTTGACTTTTCAGGGCTGGCCGTGACATTCG 178
BSNT_05553 251 GCGATGCT-GTAGTGAAATATGGAAGCTTTATACAGACGATTGTGAACTT 299
|.|||||| .|| |.||.||.||||||||.||.||.||||||||||||||
RBAM_033560__ 179 GTGATGCTCATA-TCAAGTACGGAAGCTTCATTCAAACGATTGTGAACTT 227
BSNT_05553 300 CTTAATTATATCGTTCTCCATTTTTATCGTCATTCGGACTTTGAATGG-- 347
|||.|||||.||.||.||.|||||||||||.||.||.|| |||.|
RBAM_033560__ 228 CTTCATTATTTCATTTTCTATTTTTATCGTGATCCGCAC----AATAGGC 273
BSNT_05553 348 --GTTAAGGCGCAAAAAAGAAGCAGCAGAAGAAGAGGCT------GCGGA 389
|.|.||.||.|||||||| |||||||||||||||| ||.||
RBAM_033560__ 274 AAGCTGAGACGTAAAAAAGA---AGCAGAAGAAGAGGCTGAAGAAGCCGA 320
BSNT_05553 390 GGAAGC-GATGGATGCGCAGGAG---GAGCTCCTGAAAGAAATCAGAGAC 435
||||.| ||| |||.|| ||.||.||||..|||||||||||.
RBAM_033560__ 321 GGAAACAGAT-------CAGCAGACAGAACTGCTGACTGAAATCAGAGAT 363
BSNT_05553 436 CTGCTGAAGCAGCAAGCAAAGTCTTCGGAATAA---- 468
||||||||.||||..|| ||.||..|||.|
RBAM_033560__ 364 CTGCTGAAACAGCGGGC----TCCTCACAATGACTAG 396
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