Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05546 and RBAM_033550
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:02
# Commandline: needle
# -asequence dna-align/BSNT_05546___ywpF.1.9828.seq
# -bsequence dna-align/RBAM_033550___ywpF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05546___ywpF-RBAM_033550___ywpF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05546___ywpF-RBAM_033550___ywpF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05546___ywpF
# 2: RBAM_033550___ywpF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 413
# Identity: 321/413 (77.7%)
# Similarity: 321/413 (77.7%)
# Gaps: 4/413 ( 1.0%)
# Score: 1213.0
#
#
#=======================================
BSNT_05546___ 1 ATGAAAACCTTTAAACTGGTTGACCTGAATGTGGAACGAGTGGACAAGGA 50
|||||||||||||||||||||||.||||||||||||||..|.||.||.||
RBAM_033550__ 1 ATGAAAACCTTTAAACTGGTTGATCTGAATGTGGAACGTTTAGATAAAGA 50
BSNT_05546___ 51 AGAACAATCAATCGAACAGTTTCCCCTTATTGACGGACTGATTATAAATA 100
.||.||..|.||.||.||||||||||||.|.||||||.|||||||.||.|
RBAM_033550__ 51 CGATCAGCCGATTGAGCAGTTTCCCCTTTTAGACGGATTGATTATCAACA 100
BSNT_05546___ 101 AAGAAGACGGTGAAAATCACTGGCTGATTGAGGCGCTTGTACAGAAAGAA 150
||||.|||||.||||||||.|||.|.|||||.||.||.||.|.|...|||
RBAM_033550__ 101 AAGAGGACGGAGAAAATCATTGGTTAATTGAAGCACTGGTCCCGGCCGAA 150
BSNT_05546___ 151 CATCTGTCTTTTTTTGAACA-GCTTCTAAACAGCCAATCTGAAGCCAAAG 199
||..|||||||||||| ||| |||..|.||.|||||....|||||.||.|
RBAM_033550__ 151 CACTTGTCTTTTTTTG-ACATGCTGATGAAAAGCCAGAAAGAAGCGAAGG 199
BSNT_05546___ 200 TATTTGTAACGATCACGAAAAAAAGCAATCGCCCCGCCCAGCTGAC-AGC 248
|.|||||||||||.||||||||||||||.||.|||||||||||||| .|.
RBAM_033550__ 200 TGTTTGTAACGATTACGAAAAAAAGCAACCGTCCCGCCCAGCTGACGGGA 249
BSNT_05546___ 249 AGCAGTGAAAAATATCGTCAAGCTGGAAGAAAGCATCCAGGTTTTACTCT 298
|||| |.||||||||||||.||||||||..|||.||.||.||||||.|.|
RBAM_033550__ 250 AGCA-TCAAAAATATCGTCGAGCTGGAAAGAAGTATACAAGTTTTAATTT 298
BSNT_05546___ 299 ATGGACAAATGGTCACAAGAAAACAGCAGGGCACTGAAACCATTCTCGAG 348
|.||.||||||||..|||||||.||.|..||..|.||||.||||||.|||
RBAM_033550__ 299 ACGGTCAAATGGTGTCAAGAAATCACCCCGGATCAGAAAGCATTCTGGAG 348
BSNT_05546___ 349 TCCCTTGTAAAAGAGGGCTATACAGGAACAAAACTCATTGAAGCATTTAA 398
||.||.||.|||||.|||||..|.||.|.....||.||||||||.|||||
RBAM_033550__ 349 TCGCTCGTGAAAGAAGGCTACTCGGGCAGCCGGCTGATTGAAGCGTTTAA 398
BSNT_05546___ 399 GCAAAAGTTATAA 411
.|||||.||||||
RBAM_033550__ 399 ACAAAAATTATAA 411
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