Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05545 and RBAM_033540
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:02
# Commandline: needle
# -asequence dna-align/BSNT_05545.1.9828.seq
# -bsequence dna-align/RBAM_033540___ywpG.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05545-RBAM_033540___ywpG.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05545-RBAM_033540___ywpG.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05545
# 2: RBAM_033540___ywpG
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 374
# Identity: 141/374 (37.7%)
# Similarity: 141/374 (37.7%)
# Gaps: 187/374 (50.0%)
# Score: 440.0
#
#
#=======================================
BSNT_05545 1 ATGAATCAATTTCGTTTAAAAGAAATTTATATTGACGGCGCTCCTTCTGA 50
|||||||||||.||..|.||.|||||.|||||.||.|.||.|.|
RBAM_033540__ 1 ATGAATCAATTGCGCCTGAAGGAAATCTATATAGAAGACGGTTC------ 44
BSNT_05545 51 AAGCCATTTGATTCAAAAGGAAGTAACA----TATATGTTAAGCCGTAAA 96
|||.| .||||| |..|.|| ||..||.||.||...||.
RBAM_033540__ 45 AAGGC--------GAAAAG--ACGATCATTCCTACTTGGTATGCAAAAAG 84
BSNT_05545 97 GAAGTGTTTGAGGTTCATCTGAACAAAAAAGGAAGAATAAGT----TTTT 142
||||..|.||||||.|||||.||||.||..|||| |.|| ||||
RBAM_033540__ 85 GAAGATTGTGAGGTGCATCTTAACAGAAGGGGAA----ATGTCGTCTTTT 130
BSNT_05545 143 TATACGAAACACAAGATGGCATGGAGCAGTATAAAATCAAGCTGTCAATG 192
||||.||||||.||||..|||||||.|||||||||||..||||.|||.||
RBAM_033540__ 131 TATATGAAACAAAAGACCGCATGGAACAGTATAAAATTCAGCTTTCACTG 180
BSNT_05545 193 CCGGA-AAAAAATTGA---------------------------------- 207
.|.|| |||||..|||
RBAM_033540__ 181 ACTGATAAAAAGCTGAGTTTTTACTGGTTCGCATGGGACGGCGGAAAGTT 230
BSNT_05545 207 -------------------------------------------------- 207
RBAM_033540__ 231 TGTCCGCATGTTTGAGAAAGACTGGCTCAAAACGAAACTTTTCTCGCGGC 280
BSNT_05545 207 -------------------------------------------------- 207
RBAM_033540__ 281 TGCTCAAAAATACATATTACATAAGCGGTCAAAAACAAAAGTTTTTTTTA 330
BSNT_05545 207 ------------------------ 207
RBAM_033540__ 331 TCAGAAAGAAAAACGAAAACATAA 354
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