Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05537 and RBAM_033500
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:01
# Commandline: needle
# -asequence dna-align/BSNT_05537___ywqA.1.9828.seq
# -bsequence dna-align/RBAM_033500___ywqA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05537___ywqA-RBAM_033500___ywqA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05537___ywqA-RBAM_033500___ywqA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05537___ywqA
# 2: RBAM_033500___ywqA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 2807
# Identity: 2235/2807 (79.6%)
# Similarity: 2235/2807 (79.6%)
# Gaps: 70/2807 ( 2.5%)
# Score: 8878.5
#
#
#=======================================
BSNT_05537___ 1 ATGGCGAGTCTTAAAGAAATTCTCATCCACGTCGAACAAATGGAAGATGG 50
||||||||||||||.||||||.||||.||.||.|||||||||||||||.|
RBAM_033500__ 1 ATGGCGAGTCTTAAGGAAATTTTCATTCATGTAGAACAAATGGAAGATTG 50
BSNT_05537___ 51 GTCATTTACGCTCTC-AGCCTTTGATGAGAATGAGCAGCCTCTT-CCCTA 98
|.||||||||||.|| |||| .|||||||||.||||||||.||| |.||
RBAM_033500__ 51 GACATTTACGCTGTCAAGCC-ATGATGAGAAGGAGCAGCCGCTTACTCT- 98
BSNT_05537___ 99 CAACCATATGAAAAAGCATTTGTTCCAATGGCATGAATCCTCATTTTACG 148
||..||.|||||.|..||||||||||||||||||||.|||.|.|||||||
RBAM_033500__ 99 CAGTCAGATGAAGACTCATTTGTTCCAATGGCATGAGTCCACCTTTTACG 148
BSNT_05537___ 149 GAACCTTTCTAGAGGATGTCAGCTTCATCGGGACGACTGCTGTCCTGCT- 197
||||.|||||.||.||.||||||||||||||.||..|.||.||.|||||
RBAM_033500__ 149 GAACGTTTCTTGAAGACGTCAGCTTCATCGGCACCCCGGCCGTTCTGCTC 198
BSNT_05537___ 198 ATCTCCATGGATGACTGTAGAGCTTCTCGGCAAAAACTCGTTCAACTCAT 247
|.| ||.||||||||.||.|||||.|||||.||||||||||||||.||||
RBAM_033500__ 199 AGC-CCGTGGATGACCGTCGAGCTGCTCGGAAAAAACTCGTTCAATTCAT 247
BSNT_05537___ 248 TCAGCTCCGTGCAGCTTACAGAAGAAACAGAGCCGCTGATCGAGGCGGCC 297
|||||.||||||||||.|||.|.|||||.||.|||.|.|||||.|||||.
RBAM_033500__ 248 TCAGCACCGTGCAGCTGACAAAGGAAACGGAACCGTTAATCGAAGCGGCT 297
BSNT_05537___ 298 TCGACCATCTATGAATTTATCGCGGACGGCGATTTTCTGCCTGACTATGA 347
|||||.||.||.||||||||.||.||||||||||||||.||.||.|||||
RBAM_033500__ 298 TCGACGATATACGAATTTATTGCCGACGGCGATTTTCTTCCGGATTATGA 347
BSNT_05537___ 348 CGCATGGACAAACGGTGTTTTTCGCTGGAAGGACCGCGATAATATACTGG 397
.||.|||..|||.|||||..|.||||..||.||||||||...|.|.||||
RBAM_033500__ 348 GGCTTGGCAAAATGGTGTCCTGCGCTTCAAAGACCGCGAGCTTTTGCTGG 397
BSNT_05537___ 398 AGGGCTTTACTGCGGAATGGTTTTCCGCTGCCGTACAGGATTACATCCAA 447
|.||||||||.||.||.|||||.||.||.||.||.|||||.|||||.||.
RBAM_033500__ 398 AAGGCTTTACGGCAGACTGGTTCTCAGCCGCGGTCCAGGACTACATTCAG 447
BSNT_05537___ 448 TACGACGATGAACTGCGGGAGAAATGGGAACATATCAAGGAGAAA----- 492
|||.|.|||||.||||.|||.||||||...|..||| ||||
RBAM_033500__ 448 TACAATGATGACCTGCTGGAAAAATGGCGGCGGATC-----GAAACCCGC 492
BSNT_05537___ 493 TCGCCTGCGGT---TACGTCAT-------TCCGCGGCCATTTTCTTGATG 532
||.||.||.|| ||||| | ||| |||.|.||||
RBAM_033500__ 493 TCACCGGCCGTTCATACGT--TTAAAGGCTCC--------TTTTTGGATG 532
BSNT_05537___ 533 AAGAGGATTTTCTGGAAGGCATTGGCTGGATTGACGACCAATCT----CC 578
||||.|||||||||||.||.||.||||||..||||| |||| ||
RBAM_033500__ 533 AAGATGATTTTCTGGAGGGAATCGGCTGGCATGACG----ATCTGACGCC 578
BSNT_05537___ 579 ATTTACTGTCGGCTTGCGCTTAAATGAACCGGACTTTGACGGAGACGATT 628
.|||||.|||||..|.||.|||||.||.||.||.||.|||||.|||||.|
RBAM_033500__ 579 GTTTACCGTCGGGCTCCGATTAAACGAGCCTGATTTCGACGGTGACGACT 628
BSNT_05537___ 629 GGAAAATTGAGATGTTTTTACGTGATAAAAAGAGCGGTGCTGTAGAA--T 676
|||||||.||.||||||||||||||.|||||.|.|| |||..|..| |
RBAM_033500__ 629 GGAAAATCGAAATGTTTTTACGTGAGAAAAAAACCG--GCTCCATCACCT 676
BSNT_05537___ 677 TTTTTGACAGGCTGAAGAGCCTCAAAAAATCGTGGCAGGCATACAGCGAT 726
||||||||.|.||||||.|.||.||||||.||||||||||||||||||..
RBAM_033500__ 677 TTTTTGACGGACTGAAGGGACTGAAAAAAGCGTGGCAGGCATACAGCGGA 726
BSNT_05537___ 727 AAAATCGCGCGTGAGCAGGACCGCTTTCACAGAACGGTTCCGTGGCTGTC 776
|||||||||||.||.|||||||||||.|.||||||||||||.|||||.||
RBAM_033500__ 727 AAAATCGCGCGCGAACAGGACCGCTTCCGCAGAACGGTTCCCTGGCTTTC 776
BSNT_05537___ 777 ATTTGATTCCGGGACAACGCTGATCTCGGAGGAAGAAGCCTGGATCTTCC 826
.||||||||.||.||.||||||||.||.||.|||||.||.|||||||||.
RBAM_033500__ 777 GTTTGATTCAGGAACGACGCTGATTTCTGAAGAAGAGGCTTGGATCTTCT 826
BSNT_05537___ 827 TGTCAGAAGCAAGTGAGACGCTTGTCGATATGGGGGTAGAAATCCTCCTG 876
|.||.|||||.|||||||||||||||||||||||.||.||.||.||.||.
RBAM_033500__ 827 TATCGGAAGCGAGTGAGACGCTTGTCGATATGGGTGTGGAGATTCTTCTC 876
BSNT_05537___ 877 CCGTCCTGGTGGCAGATTGTCAGAGACAGCAACATGATGCTGAAAGCAAA 926
||.||.|||||||||||||||.|.||||||||.||||||||.||.||.||
RBAM_033500__ 877 CCATCATGGTGGCAGATTGTCCGGGACAGCAATATGATGCTCAAGGCGAA 926
BSNT_05537___ 927 GGTGTCTTCCTCCCCGCGTGGAGAGTCATTTGTCGGCATGAATGCACTGC 976
.|||||.|||||||||||.||.|||||.||.|||||||||||.||.||||
RBAM_033500__ 927 AGTGTCATCCTCCCCGCGGGGCGAGTCCTTCGTCGGCATGAACGCTCTGC 976
BSNT_05537___ 977 TTGATTTCAACTGGCGGTTTGCGACAAATGGAATTGAACTGACTGAGGAT 1026
||||||||||||||.|.||.||.|||||.||||||||.|||||.||||||
RBAM_033500__ 977 TTGATTTCAACTGGAGATTCGCCACAAACGGAATTGAGCTGACAGAGGAT 1026
BSNT_05537___ 1027 GAATTTAATGAGCTTGTCGCCAGCAACAGGCGCCTTGTTAATATCCGCGG 1076
|||||.||||||||||||||.|.||||||.||.||.||.||.||||||||
RBAM_033500__ 1027 GAATTCAATGAGCTTGTCGCAAACAACAGACGTCTCGTCAACATCCGCGG 1076
BSNT_05537___ 1077 GCAATGGGTTAAAATCGATCCGCAGTTTATCAAACAGATGAAACGCCTGA 1126
.||||||||.|||||.||||||||.|||||.||||||||||||...||||
RBAM_033500__ 1077 CCAATGGGTGAAAATTGATCCGCAATTTATTAAACAGATGAAAAAACTGA 1126
BSNT_05537___ 1127 TGGAAAAAGCAGAATCAGAGGGACTCCACATGTCTGATATTCTGGCGCGC 1176
||||||||||.|||||.|||||.|||||||||||.||..|.|||||||||
RBAM_033500__ 1127 TGGAAAAAGCGGAATCTGAGGGCCTCCACATGTCCGACGTGCTGGCGCGC 1176
BSNT_05537___ 1177 GAGCTAATGGATCAGCAGGATGGCGGACTTGAGGATTCGGATCTGATTGA 1226
||.||.||||||||...|||...||||...|||||..|.||..|.|||||
RBAM_033500__ 1177 GAACTGATGGATCACGGGGAAAACGGAGCCGAGGACACAGACATCATTGA 1226
BSNT_05537___ 1227 TACATCCGCTTTCGCCGGCATTCAGTTTGATCTGTCTAAACAGCTCAGGT 1276
..||||.||.||.|||||.||..||.|.||..|.||.||.||||||||..
RBAM_033500__ 1227 CTCATCGGCATTTGCCGGGATCAAGATCGAATTATCAAAGCAGCTCAGAA 1276
BSNT_05537___ 1277 CACTGATTCGAAAGCTCAC---TGCCGCGGAAAACCTGCCGGAGCACGAA 1323
..|||||.||.||.||.|| ||||..|| |.|||||||||||.|||
RBAM_033500__ 1277 GCCTGATCCGCAAACTGACGGATGCCCGGG---ATCTGCCGGAGCATGAA 1323
BSNT_05537___ 1324 GTCAG-TCCTTCTTTCAAAGGAAC-GCTCCGCCCTTATCAGAAATACGGC 1371
||||| .||...|||| |||..| |||||||||||||||||..||||||
RBAM_033500__ 1324 GTCAGCGCCGCGTTTC--AGGGCCAGCTCCGCCCTTATCAGATGTACGGC 1371
BSNT_05537___ 1372 ATGAACTGGCTGCTGTTTCTGCGGGAAAGCGGTTTTGGCGCCTGTCTGGC 1421
|||||||||||.||||||.|.|||||||.|||.||.|||||||||||.||
RBAM_033500__ 1372 ATGAACTGGCTTCTGTTTTTACGGGAAAACGGCTTCGGCGCCTGTCTCGC 1421
BSNT_05537___ 1422 TGACGATATGGGGCTTGGGAAA-ACGATTCAAATGATCGCCTATTTCCTT 1470
.||.||.|||||.| ||||||| ||||||||.||||||||.|||||.||.
RBAM_033500__ 1422 AGATGACATGGGAC-TGGGAAAGACGATTCAGATGATCGCTTATTTTCTC 1470
BSNT_05537___ 1471 CACGTGAAGGAAAGCGGCCGGCAAAAAACGCCTCATTTGATTATTGCGCC 1520
||.||||||||||||||||||||||||.|||||...||.||.||||||||
RBAM_033500__ 1471 CATGTGAAGGAAAGCGGCCGGCAAAAAGCGCCTGCCTTAATCATTGCGCC 1520
BSNT_05537___ 1521 GACATCCGTACTTGGCAACTGGCAGCGGGAGCTTCAAACCTTTGCCCCTG 1570
||||||.||.||.||||||||||||||.|||||.||.|||||.||.||..
RBAM_033500__ 1521 GACATCGGTGCTCGGCAACTGGCAGCGTGAGCTCCAGACCTTCGCGCCGC 1570
BSNT_05537___ 1571 ATCTGTCTGTCGCGCTCCATTATGGGCCGCGTCGGCCAAAGGGGGATG-A 1619
|.|||...|.||.|||.|||||.||.||.||.|||||.||||||||.| |
RBAM_033500__ 1571 AGCTGAAGGCCGTGCTTCATTACGGCCCCCGCCGGCCGAAGGGGGAAGCA 1620
BSNT_05537___ 1620 TTTCGCCGCGCATTATGAAAACGCAGACGTGGTGCTCACTTCATACGGTC 1669
||| |.|.||...|||.|..||||.||.||.||.||.|||||.|||||.|
RBAM_033500__ 1621 TTT-GTCCCGGCCTATCAGGACGCGGATGTCGTTCTTACTTCTTACGGCC 1669
BSNT_05537___ 1670 TGTCACATGCAGATACTGAAGAGCTTTCTTCTGTGACATGGAACACGATC 1719
||||.||.||.|||...||||||||||||||.||||||||||.|||.|||
RBAM_033500__ 1670 TGTCGCACGCCGATCAGGAAGAGCTTTCTTCCGTGACATGGAGCACCATC 1719
BSNT_05537___ 1720 TGCCTTGATGAAGCGCAAAATATTAAAAACGCGCATACGAAGCAATCACG 1769
||||||||||||||||||||||||||||||||||||||||||||.||.||
RBAM_033500__ 1720 TGCCTTGATGAAGCGCAAAATATTAAAAACGCGCATACGAAGCAGTCCCG 1769
BSNT_05537___ 1770 CGCAATCAGGAAGCTGAAGGGGCTTCACCATATCGCGCTGAGCGGCACGC 1819
|||.|||||.||||||||.||..|.||.|||||||||||||||||.||.|
RBAM_033500__ 1770 CGCGATCAGAAAGCTGAAAGGCGTCCATCATATCGCGCTGAGCGGAACAC 1819
BSNT_05537___ 1820 CGATGGAAAACCGGCTGACTGAGCTGTGGTCCATTTTTGACTTCATGAAT 1869
|||||||||||||.|||||.|||||.|||||.||.|||||.||.|||||.
RBAM_033500__ 1820 CGATGGAAAACCGCCTGACAGAGCTTTGGTCGATCTTTGATTTTATGAAC 1869
BSNT_05537___ 1870 AAAGGCTATCTCGGCAGTTTGACCGGCTTCCATAAACGCTATGTGCTGCC 1919
||||||||||||||||||.||||||||||.||||||||||||||||||||
RBAM_033500__ 1870 AAAGGCTATCTCGGCAGTCTGACCGGCTTTCATAAACGCTATGTGCTGCC 1919
BSNT_05537___ 1920 GATCGAAAAAGACCGGGACGAAAAGAGAATCGGACAGCTTCAGCAATTAA 1969
|||.|||||||||||.||||||||.||||||...|||||||||||.||||
RBAM_033500__ 1920 GATTGAAAAAGACCGTGACGAAAAAAGAATCAACCAGCTTCAGCAGTTAA 1969
BSNT_05537___ 1970 TCCGGCCATTCCTTCTCCGCCGGACGAAACGGGATGAAGAGGTCGCGCTT 2019
|||||||.||..|.||.||||||||.||||||||||||||.||.||||||
RBAM_033500__ 1970 TCCGGCCGTTTTTACTGCGCCGGACAAAACGGGATGAAGAAGTGGCGCTT 2019
BSNT_05537___ 2020 AATCTTCCTGAGAAGCTGGAAGAAAAAGAATTTATCCCGCTGTCAGCCGA 2069
|||||||||||.|||||||||.|||||||.|||||||||||.||||||||
RBAM_033500__ 2020 AATCTTCCTGACAAGCTGGAACAAAAAGAGTTTATCCCGCTCTCAGCCGA 2069
BSNT_05537___ 2070 GCAGGCATCCCTTTATGAGCAGCTCGTCAAAGACACTTTTGACCATATGA 2119
.|||||||||||||||||.|||||.||||||||.||.|||||.||||||.
RBAM_033500__ 2070 ACAGGCATCCCTTTATGAACAGCTTGTCAAAGATACATTTGAACATATGG 2119
BSNT_05537___ 2120 CATCCCTGACCGGCATGCAGCGAAAAGCGCTGATCCTCAGCATGCTTGGA 2169
|.||.||||||||.||||||||.|||||||||||.||.||||||||.||.
RBAM_033500__ 2120 CTTCTCTGACCGGGATGCAGCGGAAAGCGCTGATTCTGAGCATGCTCGGC 2169
BSNT_05537___ 2170 CGGCTCAAGCAAATATGCGATCATCCCGCGCTTTATTTAAAGGAAGAGCA 2219
||..|.||||||||.|||||.|||||.|||||.|||||.||||||||.||
RBAM_033500__ 2170 CGCTTGAAGCAAATTTGCGACCATCCTGCGCTCTATTTGAAGGAAGAACA 2219
BSNT_05537___ 2220 AACCGAGCTGCTGGCCGGCAGATCAGTCAAGCTCGAAAAATTGCTGGAAC 2269
.||.||||||.|...|||.|||||.|||||.||.|||||..||||.||..
RBAM_033500__ 2220 GACAGAGCTGTTAAACGGGAGATCCGTCAAACTGGAAAAGCTGCTTGATT 2269
BSNT_05537___ 2270 TGATGACAGCGATTCGCGCCCAAAACGAAAGCTGCCTGATTTTCACGCAA 2319
|.|||.|.|.|||.||||..|||...|||||||||||.||||||||.|||
RBAM_033500__ 2270 TAATGGCGGTGATCCGCGGACAAGGGGAAAGCTGCCTCATTTTCACCCAA 2319
BSNT_05537___ 2320 TACATTCAGATGGGGAACATGATGAAGCGGCTGCTTGAAAAAACGTTCGG 2369
||||||||||||||.||||||||||||||.||.||.||||||||.|||||
RBAM_033500__ 2320 TACATTCAGATGGGCAACATGATGAAGCGCCTCCTGGAAAAAACATTCGG 2369
BSNT_05537___ 2370 GGAACCTGTGCAATTTTTAAATGGGAGTCTCTCCAAGCAAGAGCGGGATA 2419
.|||||.||.||.||||||||.||.||.||.||||||||.||.||.|||.
RBAM_033500__ 2370 AGAACCGGTTCAGTTTTTAAACGGAAGCCTGTCCAAGCAGGAACGCGATT 2419
BSNT_05537___ 2420 CACTCGTTGAGAAATTTCAAAGGAAAGAATATCCGACACTGATTCTTTCA 2469
|.|||||.||....||.||.|.|||||||||.|||||.||||||.|.|||
RBAM_033500__ 2420 CTCTCGTCGAACGGTTCCAGAAGAAAGAATACCCGACGCTGATTTTGTCA 2469
BSNT_05537___ 2470 CTCAAAGCTGGAGGCACCGGACTT-AATTTGACCGCCGCCAATCACGTCA 2518
||.|||||.||.||.||||| ||| ||..||||.||.||||||||.||||
RBAM_033500__ 2470 CTGAAAGCGGGCGGAACCGG-CTTGAACCTGACGGCTGCCAATCATGTCA 2518
BSNT_05537___ 2519 TCCATTATGACAGATGGTGGAACCCGGCGGTTGAAAATCAAGCGACTGAC 2568
|.||.||||||||.||||||||.||||||||.|||||.||.|||||.|||
RBAM_033500__ 2519 TTCACTATGACAGGTGGTGGAATCCGGCGGTGGAAAACCAGGCGACCGAC 2568
BSNT_05537___ 2569 CGTGCATACCGCATAGGCCAGGAGCGCTTTGTCCACGTTCATAAAATGAT 2618
||.||.|||||.||.||||||||.||.||.|||||||||||.|||.|.||
RBAM_033500__ 2569 CGCGCCTACCGAATCGGCCAGGAACGGTTCGTCCACGTTCACAAACTCAT 2618
BSNT_05537___ 2619 TACGACGGGAACAATCGAGGAAAAAATTGATGTCATGCTTGAATCCAAGC 2668
||||||||||||.||.||.|||||||||||||.||||||.|||.|.||.|
RBAM_033500__ 2619 TACGACGGGAACGATTGAAGAAAAAATTGATGCCATGCTCGAAACGAAAC 2668
BSNT_05537___ 2669 AAACCCTGAACGATCAAATTATCCAAAGTGAAAACTGGATTACCGAGCTT 2718
||||.|||||||||||.|||||||||||||||||.||||||||||||||.
RBAM_033500__ 2669 AAACGCTGAACGATCAGATTATCCAAAGTGAAAATTGGATTACCGAGCTG 2718
BSNT_05537___ 2719 TCCACACAGGAGCTTGAAGAACTGTTTACATTAAGCGCAACAGCGCAATA 2768
||..|....||||||||||||.|.||.||..|.||||||.|.|||||||.
RBAM_033500__ 2719 TCATCCGCTGAGCTTGAAGAATTATTCACCCTCAGCGCATCGGCGCAATC 2768
BSNT_05537___ 2769 A------ 2769
|
RBAM_033500__ 2769 ACATTAA 2775
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