Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05536 and RBAM_033490
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:01
# Commandline: needle
# -asequence dna-align/BSNT_05536___ywqB.1.9828.seq
# -bsequence dna-align/RBAM_033490___ywqB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05536___ywqB-RBAM_033490___ywqB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05536___ywqB-RBAM_033490___ywqB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05536___ywqB
# 2: RBAM_033490___ywqB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1661
# Identity: 1252/1661 (75.4%)
# Similarity: 1252/1661 (75.4%)
# Gaps: 100/1661 ( 6.0%)
# Score: 4689.0
#
#
#=======================================
BSNT_05536___ 1 ATGCTTCAGAATATGATTTCCAAAGACGATGTGCTGGCATCTGCTGAACA 50
|||||||||.||||||||.|.|||||.||||||||.|||.|.||||||||
RBAM_033490__ 1 ATGCTTCAGGATATGATTGCTAAAGAAGATGTGCTCGCAGCGGCTGAACA 50
BSNT_05536___ 51 GTTAAAAGAACTTCTTCCTTACAATGAGGAAAATGTTCAGCTGATCAAAA 100
|.|.|||||||||||||||||||||||.||.||||||||||||||.||.|
RBAM_033490__ 51 GCTTAAAGAACTTCTTCCTTACAATGAAGACAATGTTCAGCTGATGAAGA 100
BSNT_05536___ 101 AAGCCCTTATTTTATATCGGCAGGATTCAGTCTATCGTTTACAAG--CAG 148
||||.||.||||||||||||||||||||.|||||||||.||||.| ||
RBAM_033490__ 101 AAGCACTCATTTTATATCGGCAGGATTCCGTCTATCGTATACAGGTTCA- 149
BSNT_05536___ 149 TGAGTCCGACGGAAGTTACGGCTTACGTGCAGGATGTTGTACCTGTGCGG 198
.|..|||||.||..||.|.||.||.||||||||||||||.|||||..||
RBAM_033490__ 150 -AACCCCGACAGAGATTTCCGCATATGTGCAGGATGTTGTGCCTGTAAGG 198
BSNT_05536___ 199 GTCACATTGAACTTGTTTGTCATAGTCAAAAGCGGCTGTTCATGTCCGTC 248
|||||..|||||||.|||.||||.||.|||||||||||..||||.|||||
RBAM_033490__ 199 GTCACGCTGAACTTATTTTTCATGGTGAAAAGCGGCTGCGCATGCCCGTC 248
BSNT_05536___ 249 CGGAAG--AATCTGCCGCCATATGCTGGCTGTGTTTTTATATGTATATG- 295
.| || .|||||||||||..|||||||.||.|||.|.||.|||||||
RBAM_033490__ 249 TG--AGGCGATCTGCCGCCACGTGCTGGCCGTTTTTCTTTACGTATATGC 296
BSNT_05536___ 296 -CAATGTTCGAGCGAGTGGGTACTTTTACAGAGTATTGGCTGGAGAGGGA 344
||| ||||||||.||.|||||.|||||.||..||||||||||.||.||
RBAM_033490__ 297 CCAA--TTCGAGCGGGTCGGTACCTTTACCGAACATTGGCTGGAAAGAGA 344
BSNT_05536___ 345 AAAGCTGGAGGAAAGCAAAGAGCTCGTCCGCCGCCAGTTTCAGGAAAAGG 394
||||||.||||||||||..|||||.||||||||.||||||||||||||.|
RBAM_033490__ 345 AAAGCTTGAGGAAAGCAGGGAGCTTGTCCGCCGGCAGTTTCAGGAAAAAG 394
BSNT_05536___ 395 TGCTGCCTAATGAAGAATCGCTTTCAAGCTGGCTTGCTTTTTTTGATTCA 444
|||||||.||||||||.|||||.|||||||||||.||||||||||||||.
RBAM_033490__ 395 TGCTGCCGAATGAAGAGTCGCTGTCAAGCTGGCTCGCTTTTTTTGATTCG 444
BSNT_05536___ 445 GAGTTTTCTCTCTGGCAGGCACGTACGCCAGAAGGCAGCCAAAACATGCA 494
||.||.||.||.|||.||||.||.|||||.|..||.|||||.|..|||||
RBAM_033490__ 445 GAATTCTCGCTGTGGGAGGCGCGGACGCCGGCCGGAAGCCAGACGATGCA 494
BSNT_05536___ 495 GGGCCTCTATTACGGCTACCTGTCCGCATTAAAAAAACATGCGCCGAACA 544
||||||.|||||||||||.|||||.||..|.||||||||..|.|||||.|
RBAM_033490__ 495 GGGCCTTTATTACGGCTATCTGTCAGCGCTCAAAAAACACACCCCGAAAA 544
BSNT_05536___ 545 AGCCGGAGCTGAAAAGCCTGTATCAGATTCATTCCGCGATTGCGGTTTGG 594
|.||.|||||.||||||.||||||||||||||||.|||.||||.||.|||
RBAM_033490__ 545 AACCCGAGCTTAAAAGCTTGTATCAGATTCATTCGGCGCTTGCCGTCTGG 594
BSNT_05536___ 595 CTTCGCATGTTCACATTGATTGAAGCGGGCAAGCTGAACCCCGAACAAGA 644
||||.|||||||||.||||||||..|.||||...||.|..|||||.||||
RBAM_033490__ 595 CTTCACATGTTCACTTTGATTGAGTCAGGCAGATTGGATGCCGAAAAAGA 644
BSNT_05536___ 645 TTTTTATTCCCTCAATCCGTACGTTGAACAGCTGATGGATACAATCTACA 694
||.|||...|.|||||||.|||||.|||||||||||||||||.||.||..
RBAM_033490__ 645 TTATTACAGCATCAATCCATACGTGGAACAGCTGATGGATACGATTTATT 694
BSNT_05536___ 695 GCTCTATTGATAAATTAAAAACGTACGCGCTGTCTTTTGCGCTTGATCCG 744
.|||.|||||.|.|.|.|||||||||||..||||||||.|.||.|||||.
RBAM_033490__ 695 CCTCCATTGACAGACTGAAAACGTACGCTTTGTCTTTTTCACTCGATCCC 744
BSNT_05536___ 745 TTTTTGGATAAAACACCGGA-------TGTTATCC---GACCTTTGCTGT 784
||||| |.|||||| .||..||| ||| ||||..
RBAM_033490__ 745 TTTTT-------AGACCGGACGCCCCCGGTGCTCCGCAGAC---TGCTTG 784
BSNT_05536___ 785 TGAAAGAAGAAATTTTCCAATATGAACGCATCCGCGTCTTCGGTGAAATT 834
||||||||||..||||.|||||.||||||.||||.||.|||||||||||.
RBAM_033490__ 785 TGAAAGAAGAGCTTTTTCAATACGAACGCCTCCGGGTATTCGGTGAAATG 834
BSNT_05536___ 835 TGGAGTGCGCTGCTGTCGCGGCCAAAATGGGTGGCACGTGAACAGGAGA- 883
|||||.|||||..||...|||||.||||||||.||.|||||||||||||
RBAM_033490__ 835 TGGAGCGCGCTTTTGAACCGGCCGAAATGGGTCGCGCGTGAACAGGAGAT 884
BSNT_05536___ 884 TATTGAAAAAAGAAGCAGGACGGCGTTTTTCTCCCGAATTGCAATTCGGG 933
|.|.|||.|...|||| ||.||.||||||||.||.|||||||..|||||.
RBAM_033490__ 885 TCTCGAACAGGAAAGC-GGGCGCCGTTTTTCGCCGGAATTGCGGTTCGGA 933
BSNT_05536___ 934 CGCCTGCATTTGGAATTCCTGCAAAAGAATGATGACGTTATTTTTGCGGA 983
||.||.|||.|||..||..|||||||..||||| ||
RBAM_033490__ 934 CGGCTTCATCTGGCCTTTTTGCAAAAAGATGAT---------------GA 968
BSNT_05536___ 984 AGCGGAT----CAA------------TTCCCGCCGGAAGCGCTCCCTTAT 1017
||||| | ||| |||||.||.||||||||.||.|||
RBAM_033490__ 969 AGCGG-TCTTCCAAGATATGTCCCGCTTCCCTCCTGAAGCGCTGCCGTAT 1017
BSNT_05536___ 1018 ACGTTCCAATGGCTGAGTGAAATGACTGCCAAGAAGGACTGGAAACGGCT 1067
||.||.||||||||..|||||.|.||.||.||.||.||||||||||||||
RBAM_033490__ 1018 ACCTTTCAATGGCTCGGTGAACTCACCGCGAAAAAAGACTGGAAACGGCT 1067
BSNT_05536___ 1068 TAAAACATGGTA---CCAGCAAATTGAGCCAATTGCGATGGGT----TAT 1110
.|||.||||||| ||.| ||.||.||..|||| .|| |||
RBAM_033490__ 1068 GAAAGCATGGTATGGCCGG---ATCGAACCGCTTGC----CGTCAACTAT 1110
BSNT_05536___ 1111 ACGAAGCTGGATAAGCCGTTTAAAGAGATTCGCGATGTGATCGGCGAGCT 1160
||||||||.|||||||||||||||||.||.|||||..|.|||||.|||||
RBAM_033490__ 1111 ACGAAGCTTGATAAGCCGTTTAAAGAAATGCGCGACATTATCGGAGAGCT 1160
BSNT_05536___ 1161 GTTCCTTCTGTTGAATGCCTATGTGCAGCAAAC-CA----ATGATCAAGC 1205
|||....||.|||...|..||||.||.|| || || |||||||
RBAM_033490__ 1161 GTTTGCGCTATTGGCGGATTATGCGCGGC--ACTCACGGGATGATCA--- 1205
BSNT_05536___ 1206 GCTGTTTGAGCGCTTTGCCGCGGGCTGTCTGCCGTATACGTTCACAGAAT 1255
|||||||||.||.|||||..|.|||||.||.||.|||||.||.||.||||
RBAM_033490__ 1206 GCTGTTTGAACGGTTTGCTTCCGGCTGCCTTCCCTATACCTTTACCGAAT 1255
BSNT_05536___ 1256 ACAGCCATCATTTATATGAAAAAAAACGCTATGCCGAGTGGATTGAAATT 1305
|||||||..|..|.||.||||||..|||.||.||.||||||.|.||.|||
RBAM_033490__ 1256 ACAGCCAGTACCTGTACGAAAAACGACGGTACGCGGAGTGGGTGGAGATT 1305
BSNT_05536___ 1306 CATAGCCTTGTCGGCTTGTCCATCAATGAAATGGATAAAATG--ATGCTC 1353
||.|||||.|||||.||.|||.||...|||||.| ||||.| ||.||.
RBAM_033490__ 1306 CACAGCCTCGTCGGTTTTTCCGTCTGGGAAATCG--AAAAGGACATCCTG 1353
BSNT_05536___ 1354 AAGGAAATTGCAGCGAGCGACCCTGAGGCGCTTATACCGGCTTACCATAG 1403
|||||||||||.||.||.||.||.||.|||||.||.||..|.||.||..|
RBAM_033490__ 1354 AAGGAAATTGCCGCCAGTGATCCGGAAGCGCTCATCCCCTCCTATCACCG 1403
BSNT_05536___ 1404 AGAAGTGGCTTTTTTCATTGATCAGAAGAACCGCAGCTCGTACAAGGAAG 1453
.|..|.|||.|||||.||.||.||.||.|||||||||.|.||.||.||.|
RBAM_033490__ 1404 GGCGGCGGCCTTTTTTATCGACCAAAAAAACCGCAGCGCCTATAAAGAGG 1453
BSNT_05536___ 1454 CCGCCCGGTATTTGAAAAAATTGCGCACCCTGTACAAAAAAGCGAAAAAG 1503
|.||.||..||.||||||||.||||.||.||.||.|||||.||.|||||.
RBAM_033490__ 1454 CTGCGCGCCATCTGAAAAAACTGCGGACGCTTTATAAAAAGGCAAAAAAA 1503
BSNT_05536___ 1504 CAGAAGGTGTGGGAGCGGTATATTCAG-CTGCTGAGCTCGCA--TTACAA 1550
|||.||||.||||||||||||| |||| |.|||||| |||| .|||||
RBAM_033490__ 1504 CAGCAGGTATGGGAGCGGTATA-TCAGCCGGCTGAG--CGCAAGCTACAA 1550
BSNT_05536___ 1551 GCGCCTGCGTGCGCTTCAAGAAGAACTGCAGAAAGGAAAGTTGATTGATG 1600
|.|.|||||.||.||||||||||||.||||||||||||||||||||||||
RBAM_033490__ 1551 GAGGCTGCGCGCCCTTCAAGAAGAATTGCAGAAAGGAAAGTTGATTGATG 1600
BSNT_05536___ 1601 GCGAGTCTTAA 1611
|||||||||||
RBAM_033490__ 1601 GCGAGTCTTAA 1611
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