Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05531 and RBAM_033460

See Amino acid alignment / Visit BSNT_05531 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:01
# Commandline: needle
#    -asequence dna-align/BSNT_05531___ywqE.1.9828.seq
#    -bsequence dna-align/RBAM_033460___ywqE.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05531___ywqE-RBAM_033460___ywqE.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05531___ywqE-RBAM_033460___ywqE.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05531___ywqE
# 2: RBAM_033460___ywqE
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 806
# Identity:     545/806 (67.6%)
# Similarity:   545/806 (67.6%)
# Gaps:          82/806 (10.2%)
# Score: 1635.5
# 
#
#=======================================

BSNT_05531___      1 ATGATCGATATTCACTGTCACATTCTTCCCGCAATGGATGACGG---GGC     47
                     |||||.|||||.||.||||||||.|||||..|.||.||.|||||   |||
RBAM_033460__      1 ATGATAGATATCCATTGTCACATCCTTCCTTCCATAGACGACGGCGCGGC     50

BSNT_05531___     48 AGGTGATTCGGCCGACAGCATAGAA-ATGGCAAGAGCCGCTGTTCGTCAG     96
                     .|.||||   .|.||.|||.| ||| |||||.||||..||.||..|.|||
RBAM_033460__     51 GGATGAT---ACAGAAAGCCT-GAAGATGGCGAGAGAAGCGGTCAGACAG     96

BSNT_05531___     97 GGAATCCGGACGATCATTGCGACACCTCATCAT----AACAACGGTGTGT    142
                     ||.||....||||||||.|||||.||.||||||    ||.|.||.|.|| 
RBAM_033460__     97 GGGATTGATACGATCATCGCGACGCCGCATCATGTGAAATACCGCTATG-    145

BSNT_05531___    143 ATAAAAACGAGCCAGC-TGCAGTCAGAGAAGC----AGCAGATCAGTTAA    187
                         |.|||..||.|| |.|.||||..|||||    |||    |.|||||
RBAM_033460__    146 ----ACACGGACCGGCATACGGTCAACGAAGCGGTAAGC----CTGTTAA    187

BSNT_05531___    188 ACAAACGTTT-AATCAAAGAAGACATTCC-TTTACATGTGCTTCCGGGAC    235
                     |||||||||| ||| ||.||||.|||||| .|.|| |||.||.||.||.|
RBAM_033460__    188 ACAAACGTTTGAAT-AAGGAAGGCATTCCGCTGAC-TGTTCTGCCCGGCC    235

BSNT_05531___    236 AGGAAATCAGAATCTACGGCGA---GGTGGAACAAGACCTTGCCAAACAG    282
                     ||||||||||||...||||.||   |.|||   .||..|||  |||  ||
RBAM_033460__    236 AGGAAATCAGAACAGACGGAGATCTGCTGG---CAGGTCTT--CAA--AG    278

BSNT_05531___    283 CAGCT-GCTT---TCGCTGAATGATACAAAACACATCTTGATTGAGTTTC    328
                     |.||| ||||   .||||..||.|||||||..|..|..||...||.||||
RBAM_033460__    279 CGGCTCGCTTGTCCCGCTCCATAATACAAAGTATGTGCTGGCGGAATTTC    328

BSNT_05531___    329 CGTTTGATCACGTTCCCCG--ATATGCGGAGCAGCTTTTTTATGATTTGC    376
                     ||...|||||.||  ||||  .||.||.||...|||.||||||||..|||
RBAM_033460__    329 CGGCGGATCATGT--CCCGGCCTACGCTGAAAGGCTGTTTTATGAACTGC    376

BSNT_05531___    377 AGCTGAAAGGATATATTCCGGTTATCGCCCATCCTGAACGCAACAGGGAA    426
                     |||||||.||||||.|.||.||.|||||||||||.||.||.|||||||||
RBAM_033460__    377 AGCTGAACGGATATGTCCCCGTCATCGCCCATCCGGAGCGGAACAGGGAA    426

BSNT_05531___    427 ATTCGCGAAAACCCGTCCTTGCTGTATCA-TCTTGTGGAAAAAGGAGCAG    475
                     ||||||||||||||.|||.|.||.|| || |||||||.|.|||||.||.|
RBAM_033460__    427 ATTCGCGAAAACCCTTCCGTCCTATA-CAGTCTTGTGAAGAAAGGCGCGG    475

BSNT_05531___    476 CATCTCAGATTACTTCAGGAAGTCTTGCGGGGACCTT----CGGCAAGCA    521
                     ...|.||..|.||..|.||..|..||||.||..|.||    |||.|||| 
RBAM_033460__    476 TCGCCCAAGTGACGGCCGGCTGCATTGCCGGAGCATTCGGGCGGAAAGC-    524

BSNT_05531___    522 GCTGAAAGCATTTTCTCTCCGGCTGGTTGAAGCCAATTTGATCCA-TTTC    570
                        ||||.|.|||||.||.|.||||.|||||||.||||||||||| ||||
RBAM_033460__    525 ---GAAATCCTTTTCGCTGCAGCTGATTGAAGCGAATTTGATCCACTTTC    571

BSNT_05531___    571 GTAGCCTCAGATGCCCATAATGTGAAAACGAGAAATTTTCACACTCAAGA    620
                      |.||.||.||.|||||||||.|...|.|||||||||||.|...|||.||
RBAM_033460__    572 -TCGCATCTGACGCCCATAATCTCGGACCGAGAAATTTTTATTATCAGGA    620

BSNT_05531___    621 GGCCCTTTATGTTCTAGAGAAAGAATTCGGCTCGGAACTTCCTTATATGC    670
                     |||.||....|||||..|.||||||...||..||||.||...|||.||||
RBAM_033460__    621 GGCGCTCGGCGTTCTGAAAAAAGAAGCAGGGGCGGAGCTGATTTACATGC    670

BSNT_05531___    671 TGACGGAAAATGCAGAGCTTCTCCTGC-GGAATCAGA-CCATCT-TCAGA    717
                     |.|||||||||||.|.|||||||  || |.||.||.| ||.|.| |.|| 
RBAM_033460__    671 TCACGGAAAATGCGGCGCTTCTC--GCTGAAAACAAAGCCGTTTATAAG-    717

BSNT_05531___    718 CAGCCTCCGCAGCCGGT-------CAAAAGAAGAAAATTG-TTTGGTCTT    759
                     .|.|||||||.|||.||       |..|||        .| |..||||||
RBAM_033460__    718 GAACCTCCGCTGCCTGTGGCCCGCCGTAAG--------CGCTGGGGTCTT    759

BSNT_05531___    760 TTTTAA    765
                     ||||||
RBAM_033460__    760 TTTTAA    765


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05531 and RBAM_033460

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
