Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05524 and RBAM_033430
See
Amino acid alignment /
Visit
BSNT_05524 in genome browser /
Return to
Orthologue table
########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:00
# Commandline: needle
# -asequence dna-align/BSNT_05524___ywqH.1.9828.seq
# -bsequence dna-align/RBAM_033430___ywqH.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05524___ywqH-RBAM_033430___ywqH.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05524___ywqH-RBAM_033430___ywqH.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05524___ywqH
# 2: RBAM_033430___ywqH
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 483
# Identity: 262/483 (54.2%)
# Similarity: 262/483 (54.2%)
# Gaps: 108/483 (22.4%)
# Score: 598.0
#
#
#=======================================
BSNT_05524___ 1 ATGGGTTATGAAAG-----TATGCTAGCGGATATCAAAAGTTCGCTCAAC 45
|||.|..||..||| ||.|| .||||.||.||..|..|||.|
RBAM_033430__ 1 ATGAGCCATTCAAGCACATTAAGC-----CATATTAACAGCACAATCAGC 45
BSNT_05524___ 46 GGAAAAATTTCCGACGTGGAAGACAAGATCGAAAAGCTGAAAAAAGCAAA 95
...|||.|...|||.||.|||.||.|.||.||.||..|.|||.||||.||
RBAM_033430__ 46 CATAAACTGGGCGAGGTTGAACACCAAATTGATAAATTAAAAGAAGCGAA 95
BSNT_05524___ 96 AAAGGACATAGACACACTGCAAGAAGAGGCAATCACTGAAATCAAAGAAA 145
||..||.|||||..|.|||||.|||||||...|..|||||||||..||.|
RBAM_033430__ 96 AAGAGAGATAGAATCTCTGCAGGAAGAGGGCGTATCTGAAATCAGGGACA 145
BSNT_05524___ 146 TTGTGAAACCGGAATTGGGCAAGCATTGGACGGGAACAAAAGCCGATGAT 195
|..|.|..|||.|..|||.|.|.||||||||.||.||....||.||.||.
RBAM_033430__ 146 TCCTCAGGCCGCACCTGGACCATCATTGGACCGGCACTTTTGCTGAAGAA 195
BSNT_05524___ 196 TTCGACAAGGGAAGAGAAGAGGCGAAATCGGAAGCATCCAAGATTGTGAA 245
||.||..|..|..|.||..||||..|..|.|||||||.||..||.||.|.
RBAM_033430__ 196 TTTGATGACCGGCGCGATCAGGCCCATACAGAAGCATACAGAATCGTCAC 245
BSNT_05524___ 246 TGATAAATATAACGAGTATATGGCTT--CGATTCAAAGCAAAATATTCTG 293
.||.|||||..|||..||||| || |||.|| |
RBAM_033430__ 246 AGACAAATACGACGGTTATAT---TTACCGAATC---------------G 277
BSNT_05524___ 294 GCTTGA----GACAGAGAAATTTGAGC-TGAATTTGACAAAAAG------ 332
||||.| |||| .||| ||||.||| ||||||
RBAM_033430__ 278 GCTTAAAGATGACA---------CAGCTTGAAATTG--AAAAAGGAGGGC 316
BSNT_05524___ 333 ----TGCAGC--GAATGC--CGC-----AGGC----GACCTTCT--TGCT 363
|||.|| ||| || ||| |||| .||||.|| .|||
RBAM_033430__ 317 TCCTTGCCGCCAGAA-GCATCGCGAGAGAGGCAGAGCACCTGCTGACGCT 365
BSNT_05524___ 364 AAAGGAGAAGA-----TT-------TCGTAGAAGAAGCAGGAAGACAAAT 401
.|||||||| || |||.||||.| ||.||||
RBAM_033430__ 366 --GGGAGAAGAAGCCCTTGACACGGTCGGAGAAAA------AATACAA-- 405
BSNT_05524___ 402 TAGTAAACTAAAA-----TGGTGGTGA------ 423
|.||..|||| |||.|.||.
RBAM_033430__ 406 ---TCAATCAAAAGAAGCTGGAGTTGGTTTTAA 435
#---------------------------------------
#---------------------------------------
Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.