Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05522 and RBAM_033420

See Amino acid alignment / Visit BSNT_05522 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:00
# Commandline: needle
#    -asequence dna-align/BSNT_05522___ywqI.1.9828.seq
#    -bsequence dna-align/RBAM_033420___ywqI.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05522___ywqI-RBAM_033420___ywqI.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05522___ywqI-RBAM_033420___ywqI.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05522___ywqI
# 2: RBAM_033420___ywqI
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 275
# Identity:     181/275 (65.8%)
# Similarity:   181/275 (65.8%)
# Gaps:          28/275 (10.2%)
# Score: 560.5
# 
#
#=======================================

BSNT_05522___      1 ATGTCAGAAATTAAGCTGAAGTACGACACAGTCATCAA--AACATTGGAT     48
                     |||.|||||||.||.||.||.||||...|.|||||.||  |.|  |.||.
RBAM_033420__      1 ATGGCAGAAATAAAACTCAAATACGGAGCCGTCATGAAGCAGC--TTGAA     48

BSNT_05522___     49 TCTGTCAAAGATGCGCTT-----GCTGACGTATCAATCGGCGCCGCGGGG     93
                     ||.|||  ||..||||||     |||   ||.||.|||||...|||.||.
RBAM_033420__     49 TCCGTC--AGCAGCGCTTTGGAGGCT---GTTTCGATCGGGAACGCCGGT     93

BSNT_05522___     94 TCCAATGGAAAAAACAAACTCGATTATACGAAAAAATACCATGAGCGTGA    143
                     ||.||.|||||||||||.|||||.|||||....||.|||||....||.||
RBAM_033420__     94 TCAAACGGAAAAAACAAGCTCGACTATACCTCCAAGTACCAATCCCGCGA    143

BSNT_05522___    144 GGAGAACATCAA-------AACCATGCTCGGAGATTATAAAAAAGCGGTA    186
                     ||       |||       |.|.|||.||.|.||.||.||..|.||.||.
RBAM_033420__    144 GG-------CAAAGCTTGTATCGATGATCAGCGAATACAAGCAGGCCGTT    186

BSNT_05522___    187 CAGAAAAATATCGAGGATACAAAGGATAATGTAGATTCACTCAAAGAGCA    236
                     ||.||.|||||||.|||....||.||.||.||||||||..|.|||||.||
RBAM_033420__    187 CATAAGAATATCGCGGACGTTAAAGACAACGTAGATTCTTTGAAAGAACA    236

BSNT_05522___    237 GGACGAGGCGATAGCGGTAAAATAG    261
                     ||||||||||||.||.||||||||.
RBAM_033420__    237 GGACGAGGCGATCGCCGTAAAATAA    261


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