Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05521 and RBAM_033410

See Amino acid alignment / Visit BSNT_05521 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:28:00
# Commandline: needle
#    -asequence dna-align/BSNT_05521.1.9828.seq
#    -bsequence dna-align/RBAM_033410___ywqJ.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05521-RBAM_033410___ywqJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05521-RBAM_033410___ywqJ.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05521
# 2: RBAM_033410___ywqJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1769
# Identity:    1248/1769 (70.5%)
# Similarity:  1248/1769 (70.5%)
# Gaps:         307/1769 (17.4%)
# Score: 5145.5
# 
#
#=======================================

BSNT_05521         1 ATGAGCAAAGTATTTGAATCTAAATCTTTAATCGAAGAAGC-GAAGAGCA     49
                     |||||||||||.||||||||..||||.||||..||.||||| ||..|| |
RBAM_033410__      1 ATGAGCAAAGTGTTTGAATCACAATCGTTAACGGACGAAGCAGATAAG-A     49

BSNT_05521        50 GAAAAAAGCAATATGAGACGCTTGAGGAGCAGCTGAATACGCTGAAAAAA     99
                     ||||.||.|||||.||..|.|||||.|||||||||..|.||||.|||.||
RBAM_033410__     50 GAAAGAAACAATACGAAGCCCTTGAAGAGCAGCTGCGTGCGCTCAAACAA     99

BSNT_05521       100 GCGTTTCAGGGAGTTGCAGATTTAGGCGATAATTTTAAAGGAAAAGGCGC    149
                     ||.|||||.||.||.||.|||.|.||.|||..|||.|||||.||||||||
RBAM_033410__    100 GCCTTTCAAGGCGTGGCCGATCTGGGTGATGCTTTGAAAGGGAAAGGCGC    149

BSNT_05521       150 GGACAATATTAAAGATTTTTTTCAGGGACAGGCGGAAATCGTAGACAGCT    199
                     .||||||||.||||||||||||||||||||.||||||||||..|||||||
RBAM_033410__    150 AGACAATATAAAAGATTTTTTTCAGGGACAAGCGGAAATCGCCGACAGCT    199

BSNT_05521       200 GGCTGACGCTTGTCTCTGCTCAAATTGCGTTTTTAAATGGCATTTCAGGA    249
                     |||||||||||||||||||||||||||||||||||||||||||||||||.
RBAM_033410__    200 GGCTGACGCTTGTCTCTGCTCAAATTGCGTTTTTAAATGGCATTTCAGGT    249

BSNT_05521       250 GATATTAAAGATCAAGAACTGAATGATTCATATGTGGAAACTTCTTTTTT    299
                     ||.|||||||||||||||||.|..|||.||||||||||.|||||.|||||
RBAM_033410__    250 GACATTAAAGATCAAGAACTCAGCGATACATATGTGGAGACTTCATTTTT    299

BSNT_05521       300 GGATCATGAGCTGCCCAATGGAGACCTGAAAGCCTCAGAGATTGTCTCCG    349
                     |||.||||||||||||||.|..||..|||||||.||||||||||||||||
RBAM_033410__    300 GGAGCATGAGCTGCCCAACGCGGATTTGAAAGCTTCAGAGATTGTCTCCG    349

BSNT_05521       350 CCCATAAAGAAGAAATCGATTCTATTTTGTCAGGCATCAGCGATATTATT    399
                     |.|||||||.||||||||||||.|||||||||||||||||||||||||||
RBAM_033410__    350 CTCATAAAGCAGAAATCGATTCAATTTTGTCAGGCATCAGCGATATTATT    399

BSNT_05521       400 GACCTCGACATGTATACGCTTGACGACTATGCAGATAAGATGGGCGATGC    449
                     .|.|||||||..||||||||.||.||.||.||.|||||.|||||||||||
RBAM_033410__    400 CATCTCGACACATATACGCTGGATGATTACGCTGATAAAATGGGCGATGC    449

BSNT_05521       450 CCAAAAAATCAGACGTGACACGATCACAGCTGTCGATAAGCTTGATGAAT    499
                     |||.||||.||||||||||||||||||.||.|||||||.|||||||||||
RBAM_033410__    450 CCAGAAAACCAGACGTGACACGATCACGGCAGTCGATACGCTTGATGAAT    499

BSNT_05521       500 CCCTGACAACTGAATATCAAAATTTAGAATCTCTGGACAACGCAGTGCTC    549
                     |||||||..|||||||||||||.||||||||||||||||||||.||||||
RBAM_033410__    500 CCCTGACTGCTGAATATCAAAACTTAGAATCTCTGGACAACGCCGTGCTC    549

BSNT_05521       550 ACCAAATATTCCGTTCTCATGCAGGCCACCAGCAATGGGAAGAGCGCTTC    599
                     |.|||||||||.|||||||||||||||||||||||.|||||.|||||.||
RBAM_033410__    550 AGCAAATATTCTGTTCTCATGCAGGCCACCAGCAACGGGAAAAGCGCATC    599

BSNT_05521       600 TCCTATGTACTATGACAAAAAAGCCTTCCACAGCAATGAAGTCTACAAAA    649
                     .|||||||||||||||||||||||||||||||||||||||.|||||||||
RBAM_033410__    600 CCCTATGTACTATGACAAAAAAGCCTTCCACAGCAATGAAATCTACAAAA    649

BSNT_05521       650 GCGTCATTGAAGTAGAAAATCAAGGAACAACCTATATCGATGCAAAAACC    699
                     ||||||..|....||||||.||.|||||...||||||.||.||||||.||
RBAM_033410__    650 GCGTCACGGCGACAGAAAAACAGGGAACGGACTATATTGACGCAAAAGCC    699

BSNT_05521       700 CAGCAAGCAGAAGCAAGACGGCTCCAGGAAAAAGCCGAGGAAGAAGCAAA    749
                     |||||.||.||||||||||||||.||||||||.||.||.||||||||.||
RBAM_033410__    700 CAGCAGGCCGAAGCAAGACGGCTTCAGGAAAAGGCTGAAGAAGAAGCCAA    749

BSNT_05521       750 CAAACCGTGGTACGAAAAAACATGGGATGGAGTTTGCAACTTTACTGGAG    799
                     .|||||.||||||||||||||||||||.||..|.|||||||||||.||.|
RBAM_033410__    750 TAAACCATGGTACGAAAAAACATGGGACGGCATCTGCAACTTTACCGGCG    799

BSNT_05521       800 AAGTCACTGGCTATTATGATTATAAAAGAGCAACCGAAGGCGTTGATCCG    849
                     |||||||.||||||||||||||||||||||||.|||||||.|||||||||
RBAM_033410__    800 AAGTCACCGGCTATTATGATTATAAAAGAGCAGCCGAAGGTGTTGATCCG    849

BSNT_05521       850 GTTACCGGAGAAAAACTCTCCACCGCAGAGCGTGTGACAGCAGGAGCTAT    899
                     ||.|||||||||||.||||||||||||||.||.||.|||||||||||.||
RBAM_033410__    850 GTGACCGGAGAAAAGCTCTCCACCGCAGAACGCGTCACAGCAGGAGCGAT    899

BSNT_05521       900 GGCCGCTGCCGGATTCATACCAGTCGTCGGCTGGGCAGGCCGGGCCTTCA    949
                     ||||||.||||||||||||||.||||||||||||||.|||||.||.||||
RBAM_033410__    900 GGCCGCCGCCGGATTCATACCGGTCGTCGGCTGGGCGGGCCGCGCTTTCA    949

BSNT_05521       950 AAGGCGGAAAAGCCATCTACAAAACCGGAAAAGCAGCTATCGCGGCTGAA    999
                     ||||||||||||||||.|||||||||||||||.|.|..||.||.||.|||
RBAM_033410__    950 AAGGCGGAAAAGCCATTTACAAAACCGGAAAAACCGTCATTGCCGCAGAA    999

BSNT_05521      1000 CACGCTTTAGACGCCTACAAAACAGGCAAATCCTTAGACATTCTCAAAAT   1049
                     ||.||||||||.|||||.|||||.||.|||||||||||||||||||||||
RBAM_033410__   1000 CATGCTTTAGATGCCTATAAAACCGGAAAATCCTTAGACATTCTCAAAAT   1049

BSNT_05521      1050 GACAGAAATGGGTGCATACGGCCTTGTAGCGTCAAACGGATTCTCAGAAG   1099
                     ||||||||||||.||||||||||||||.||.||||||||||||.|.||||
RBAM_033410__   1050 GACAGAAATGGGCGCATACGGCCTTGTCGCCTCAAACGGATTCACCGAAG   1099

BSNT_05521      1100 CCGTCACAGGCCGGGATATGTTCGGAAACAAAGTGTCTGAGGAGAAGCGG   1149
                     |||||||||||||||||||||||||||||||||||||.||||||||||||
RBAM_033410__   1100 CCGTCACAGGCCGGGATATGTTCGGAAACAAAGTGTCCGAGGAGAAGCGG   1149

BSNT_05521      1150 AA--AACGGGTGCGCTGGAAGCGGCATTGAGCTTGGTTGGAGCCGGTGCA   1197
                     ||  ||  ||.||.||||||||.||..||||.||||||||||||||.||.
RBAM_033410__   1150 AAGCAA--GGGGCACTGGAAGCTGCGCTGAGTTTGGTTGGAGCCGGGGCG   1197

BSNT_05521      1198 TTGGCGAAACATATTGATAAAGGCATCCCGCTTGCAA-----CC-----C   1237
                     .|||||||.|||.|..|.||||||||.||||||||||     ||     |
RBAM_033410__   1198 CTGGCGAAGCATGTAAACAAAGGCATACCGCTTGCAAAATCGCCACAAGC   1247

BSNT_05521      1238 ATTCAAAATTCCAAAAAGCAAACAAAACACTAGAAAAAGTAAAACAATTC   1287
                     | ||||||.|..||||||..||.||.|..|||||..||||||||.|||||
RBAM_033410__   1248 A-TCAAAAGTTGAAAAAGGGAAAAAGATTCTAGACCAAGTAAAAGAATTC   1296

BSNT_05521      1288 AAAGTCCCAAC------AAACGTCCGCGTATACGCAGAACGCCCAGTAAC   1331
                     |||||.||.||      |||..|.||.||..|| .|||     |.||.||
RBAM_033410__   1297 AAAGTACCGACGAATGTAAAAATTCGTGTCCAC-AAGA-----CTGTCAC   1340

BSNT_05521      1332 TCCGGAGGGCTTTACATTCGGAATCCCGACAGTACGTGTA----GATGTG   1377
                     .|||||.|||....|.|||..|||          |.|.||    ||||||
RBAM_033410__   1341 ACCGGATGGCGCATCTTTCCCAAT----------CATTTATGCTGATGTG   1380

BSNT_05521      1378 GAAAAGACGGCTGTTAAGGATCTTGGGATTGTGAAGATGG-TAGTGATGG   1426
                     .|||.|||.|||||.||.|||||||||.|||||||||||| |||||.|||
RBAM_033410__   1381 AAAACGACTGCTGTGAAAGATCTTGGGGTTGTGAAGATGGCTAGTGGTGG   1430

BSNT_05521      1427 ---CGGTCGTAAGGG--------AAGC--TCTCA---------TAGTCCT   1454
                        .|||..||||||        ||.|  |.|||         .|||..|
RBAM_033410__   1431 TAAAGGTATTAAGGGTATTGTTAAACCTGTTTCAAATATGAATGAGTTTT   1480

BSNT_05521      1455 --------------------AACAT----------TTCTAAAAATCACGA   1474
                                         ||.||          ||.|.|||||||..|
RBAM_033410__   1481 TTGATATGGAATTTGGAAAAAAAATAAGTAACTCCTTATCAAAATCAAAA   1530

BSNT_05521      1475 -TAAAGTAG-----------------------------------------   1482
                      |||||||.                                         
RBAM_033410__   1531 GTAAAGTACGATGGACAATCAATTTATAAGGTGGAAAAGAAAACTGATAA   1580

BSNT_05521      1482 --------------------------------------------------   1482
                                                                       
RBAM_033410__   1581 CCAATATCTGAAAAAGGGTTATGGAGTTTATCTTGACGCATTACACAAAG   1630

BSNT_05521      1482 --------------------------------------------------   1482
                                                                       
RBAM_033410__   1631 ACCATTTAGAAGTAATAGATAAGACGGGAAATGTGAAATACGTATTGAAT   1680

BSNT_05521      1482 --------------------------------------------------   1482
                                                                       
RBAM_033410__   1681 TTAGATGGTACTTTAAACCCTGACAAGACTAAGAAAGCACTTGGACGAGT   1730

BSNT_05521      1482 -------------------   1482
                                        
RBAM_033410__   1731 AGTTAAGGGGTGGAAATAA   1749


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