Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05521 and RBAM_033410
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########################################
# Program: needle
# Rundate: Mon 8 Mar 2010 06:28:00
# Commandline: needle
# -asequence dna-align/BSNT_05521.1.9828.seq
# -bsequence dna-align/RBAM_033410___ywqJ.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05521-RBAM_033410___ywqJ.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05521-RBAM_033410___ywqJ.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05521
# 2: RBAM_033410___ywqJ
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1769
# Identity: 1248/1769 (70.5%)
# Similarity: 1248/1769 (70.5%)
# Gaps: 307/1769 (17.4%)
# Score: 5145.5
#
#
#=======================================
BSNT_05521 1 ATGAGCAAAGTATTTGAATCTAAATCTTTAATCGAAGAAGC-GAAGAGCA 49
|||||||||||.||||||||..||||.||||..||.||||| ||..|| |
RBAM_033410__ 1 ATGAGCAAAGTGTTTGAATCACAATCGTTAACGGACGAAGCAGATAAG-A 49
BSNT_05521 50 GAAAAAAGCAATATGAGACGCTTGAGGAGCAGCTGAATACGCTGAAAAAA 99
||||.||.|||||.||..|.|||||.|||||||||..|.||||.|||.||
RBAM_033410__ 50 GAAAGAAACAATACGAAGCCCTTGAAGAGCAGCTGCGTGCGCTCAAACAA 99
BSNT_05521 100 GCGTTTCAGGGAGTTGCAGATTTAGGCGATAATTTTAAAGGAAAAGGCGC 149
||.|||||.||.||.||.|||.|.||.|||..|||.|||||.||||||||
RBAM_033410__ 100 GCCTTTCAAGGCGTGGCCGATCTGGGTGATGCTTTGAAAGGGAAAGGCGC 149
BSNT_05521 150 GGACAATATTAAAGATTTTTTTCAGGGACAGGCGGAAATCGTAGACAGCT 199
.||||||||.||||||||||||||||||||.||||||||||..|||||||
RBAM_033410__ 150 AGACAATATAAAAGATTTTTTTCAGGGACAAGCGGAAATCGCCGACAGCT 199
BSNT_05521 200 GGCTGACGCTTGTCTCTGCTCAAATTGCGTTTTTAAATGGCATTTCAGGA 249
|||||||||||||||||||||||||||||||||||||||||||||||||.
RBAM_033410__ 200 GGCTGACGCTTGTCTCTGCTCAAATTGCGTTTTTAAATGGCATTTCAGGT 249
BSNT_05521 250 GATATTAAAGATCAAGAACTGAATGATTCATATGTGGAAACTTCTTTTTT 299
||.|||||||||||||||||.|..|||.||||||||||.|||||.|||||
RBAM_033410__ 250 GACATTAAAGATCAAGAACTCAGCGATACATATGTGGAGACTTCATTTTT 299
BSNT_05521 300 GGATCATGAGCTGCCCAATGGAGACCTGAAAGCCTCAGAGATTGTCTCCG 349
|||.||||||||||||||.|..||..|||||||.||||||||||||||||
RBAM_033410__ 300 GGAGCATGAGCTGCCCAACGCGGATTTGAAAGCTTCAGAGATTGTCTCCG 349
BSNT_05521 350 CCCATAAAGAAGAAATCGATTCTATTTTGTCAGGCATCAGCGATATTATT 399
|.|||||||.||||||||||||.|||||||||||||||||||||||||||
RBAM_033410__ 350 CTCATAAAGCAGAAATCGATTCAATTTTGTCAGGCATCAGCGATATTATT 399
BSNT_05521 400 GACCTCGACATGTATACGCTTGACGACTATGCAGATAAGATGGGCGATGC 449
.|.|||||||..||||||||.||.||.||.||.|||||.|||||||||||
RBAM_033410__ 400 CATCTCGACACATATACGCTGGATGATTACGCTGATAAAATGGGCGATGC 449
BSNT_05521 450 CCAAAAAATCAGACGTGACACGATCACAGCTGTCGATAAGCTTGATGAAT 499
|||.||||.||||||||||||||||||.||.|||||||.|||||||||||
RBAM_033410__ 450 CCAGAAAACCAGACGTGACACGATCACGGCAGTCGATACGCTTGATGAAT 499
BSNT_05521 500 CCCTGACAACTGAATATCAAAATTTAGAATCTCTGGACAACGCAGTGCTC 549
|||||||..|||||||||||||.||||||||||||||||||||.||||||
RBAM_033410__ 500 CCCTGACTGCTGAATATCAAAACTTAGAATCTCTGGACAACGCCGTGCTC 549
BSNT_05521 550 ACCAAATATTCCGTTCTCATGCAGGCCACCAGCAATGGGAAGAGCGCTTC 599
|.|||||||||.|||||||||||||||||||||||.|||||.|||||.||
RBAM_033410__ 550 AGCAAATATTCTGTTCTCATGCAGGCCACCAGCAACGGGAAAAGCGCATC 599
BSNT_05521 600 TCCTATGTACTATGACAAAAAAGCCTTCCACAGCAATGAAGTCTACAAAA 649
.|||||||||||||||||||||||||||||||||||||||.|||||||||
RBAM_033410__ 600 CCCTATGTACTATGACAAAAAAGCCTTCCACAGCAATGAAATCTACAAAA 649
BSNT_05521 650 GCGTCATTGAAGTAGAAAATCAAGGAACAACCTATATCGATGCAAAAACC 699
||||||..|....||||||.||.|||||...||||||.||.||||||.||
RBAM_033410__ 650 GCGTCACGGCGACAGAAAAACAGGGAACGGACTATATTGACGCAAAAGCC 699
BSNT_05521 700 CAGCAAGCAGAAGCAAGACGGCTCCAGGAAAAAGCCGAGGAAGAAGCAAA 749
|||||.||.||||||||||||||.||||||||.||.||.||||||||.||
RBAM_033410__ 700 CAGCAGGCCGAAGCAAGACGGCTTCAGGAAAAGGCTGAAGAAGAAGCCAA 749
BSNT_05521 750 CAAACCGTGGTACGAAAAAACATGGGATGGAGTTTGCAACTTTACTGGAG 799
.|||||.||||||||||||||||||||.||..|.|||||||||||.||.|
RBAM_033410__ 750 TAAACCATGGTACGAAAAAACATGGGACGGCATCTGCAACTTTACCGGCG 799
BSNT_05521 800 AAGTCACTGGCTATTATGATTATAAAAGAGCAACCGAAGGCGTTGATCCG 849
|||||||.||||||||||||||||||||||||.|||||||.|||||||||
RBAM_033410__ 800 AAGTCACCGGCTATTATGATTATAAAAGAGCAGCCGAAGGTGTTGATCCG 849
BSNT_05521 850 GTTACCGGAGAAAAACTCTCCACCGCAGAGCGTGTGACAGCAGGAGCTAT 899
||.|||||||||||.||||||||||||||.||.||.|||||||||||.||
RBAM_033410__ 850 GTGACCGGAGAAAAGCTCTCCACCGCAGAACGCGTCACAGCAGGAGCGAT 899
BSNT_05521 900 GGCCGCTGCCGGATTCATACCAGTCGTCGGCTGGGCAGGCCGGGCCTTCA 949
||||||.||||||||||||||.||||||||||||||.|||||.||.||||
RBAM_033410__ 900 GGCCGCCGCCGGATTCATACCGGTCGTCGGCTGGGCGGGCCGCGCTTTCA 949
BSNT_05521 950 AAGGCGGAAAAGCCATCTACAAAACCGGAAAAGCAGCTATCGCGGCTGAA 999
||||||||||||||||.|||||||||||||||.|.|..||.||.||.|||
RBAM_033410__ 950 AAGGCGGAAAAGCCATTTACAAAACCGGAAAAACCGTCATTGCCGCAGAA 999
BSNT_05521 1000 CACGCTTTAGACGCCTACAAAACAGGCAAATCCTTAGACATTCTCAAAAT 1049
||.||||||||.|||||.|||||.||.|||||||||||||||||||||||
RBAM_033410__ 1000 CATGCTTTAGATGCCTATAAAACCGGAAAATCCTTAGACATTCTCAAAAT 1049
BSNT_05521 1050 GACAGAAATGGGTGCATACGGCCTTGTAGCGTCAAACGGATTCTCAGAAG 1099
||||||||||||.||||||||||||||.||.||||||||||||.|.||||
RBAM_033410__ 1050 GACAGAAATGGGCGCATACGGCCTTGTCGCCTCAAACGGATTCACCGAAG 1099
BSNT_05521 1100 CCGTCACAGGCCGGGATATGTTCGGAAACAAAGTGTCTGAGGAGAAGCGG 1149
|||||||||||||||||||||||||||||||||||||.||||||||||||
RBAM_033410__ 1100 CCGTCACAGGCCGGGATATGTTCGGAAACAAAGTGTCCGAGGAGAAGCGG 1149
BSNT_05521 1150 AA--AACGGGTGCGCTGGAAGCGGCATTGAGCTTGGTTGGAGCCGGTGCA 1197
|| || ||.||.||||||||.||..||||.||||||||||||||.||.
RBAM_033410__ 1150 AAGCAA--GGGGCACTGGAAGCTGCGCTGAGTTTGGTTGGAGCCGGGGCG 1197
BSNT_05521 1198 TTGGCGAAACATATTGATAAAGGCATCCCGCTTGCAA-----CC-----C 1237
.|||||||.|||.|..|.||||||||.|||||||||| || |
RBAM_033410__ 1198 CTGGCGAAGCATGTAAACAAAGGCATACCGCTTGCAAAATCGCCACAAGC 1247
BSNT_05521 1238 ATTCAAAATTCCAAAAAGCAAACAAAACACTAGAAAAAGTAAAACAATTC 1287
| ||||||.|..||||||..||.||.|..|||||..||||||||.|||||
RBAM_033410__ 1248 A-TCAAAAGTTGAAAAAGGGAAAAAGATTCTAGACCAAGTAAAAGAATTC 1296
BSNT_05521 1288 AAAGTCCCAAC------AAACGTCCGCGTATACGCAGAACGCCCAGTAAC 1331
|||||.||.|| |||..|.||.||..|| .||| |.||.||
RBAM_033410__ 1297 AAAGTACCGACGAATGTAAAAATTCGTGTCCAC-AAGA-----CTGTCAC 1340
BSNT_05521 1332 TCCGGAGGGCTTTACATTCGGAATCCCGACAGTACGTGTA----GATGTG 1377
.|||||.|||....|.|||..||| |.|.|| ||||||
RBAM_033410__ 1341 ACCGGATGGCGCATCTTTCCCAAT----------CATTTATGCTGATGTG 1380
BSNT_05521 1378 GAAAAGACGGCTGTTAAGGATCTTGGGATTGTGAAGATGG-TAGTGATGG 1426
.|||.|||.|||||.||.|||||||||.|||||||||||| |||||.|||
RBAM_033410__ 1381 AAAACGACTGCTGTGAAAGATCTTGGGGTTGTGAAGATGGCTAGTGGTGG 1430
BSNT_05521 1427 ---CGGTCGTAAGGG--------AAGC--TCTCA---------TAGTCCT 1454
.|||..|||||| ||.| |.||| .|||..|
RBAM_033410__ 1431 TAAAGGTATTAAGGGTATTGTTAAACCTGTTTCAAATATGAATGAGTTTT 1480
BSNT_05521 1455 --------------------AACAT----------TTCTAAAAATCACGA 1474
||.|| ||.|.|||||||..|
RBAM_033410__ 1481 TTGATATGGAATTTGGAAAAAAAATAAGTAACTCCTTATCAAAATCAAAA 1530
BSNT_05521 1475 -TAAAGTAG----------------------------------------- 1482
|||||||.
RBAM_033410__ 1531 GTAAAGTACGATGGACAATCAATTTATAAGGTGGAAAAGAAAACTGATAA 1580
BSNT_05521 1482 -------------------------------------------------- 1482
RBAM_033410__ 1581 CCAATATCTGAAAAAGGGTTATGGAGTTTATCTTGACGCATTACACAAAG 1630
BSNT_05521 1482 -------------------------------------------------- 1482
RBAM_033410__ 1631 ACCATTTAGAAGTAATAGATAAGACGGGAAATGTGAAATACGTATTGAAT 1680
BSNT_05521 1482 -------------------------------------------------- 1482
RBAM_033410__ 1681 TTAGATGGTACTTTAAACCCTGACAAGACTAAGAAAGCACTTGGACGAGT 1730
BSNT_05521 1482 ------------------- 1482
RBAM_033410__ 1731 AGTTAAGGGGTGGAAATAA 1749
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