Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05502 and RBAM_033240
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:59
# Commandline: needle
# -asequence dna-align/BSNT_05502___ywrF.1.9828.seq
# -bsequence dna-align/RBAM_033240___ywrF.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05502___ywrF-RBAM_033240___ywrF.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05502___ywrF-RBAM_033240___ywrF.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05502___ywrF
# 2: RBAM_033240___ywrF
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 649
# Identity: 422/649 (65.0%)
# Similarity: 422/649 (65.0%)
# Gaps: 59/649 ( 9.1%)
# Score: 1218.5
#
#
#=======================================
BSNT_05502___ 1 ATGTACATATTTCAAGCTGATCAGCTTAGTGCCAAAGACACATACAAGCT 50
|||.|.||.||.|.|||.||..|.||.|..||.||||||||.|||||
RBAM_033240__ 1 ATGCATATCTTACGAGCAGACGAACTGAACGCAAAAGACACTTACAA--- 47
BSNT_05502___ 51 ATTG---TCAGGTACCGTTATTCCCCGCCCCATTGCATTTGTGACAAC-- 95
|||| ||.||.||.||..|||||||.||.||.||||||||.||.||
RBAM_033240__ 48 ATTGCTTTCGGGCACAGTCGTTCCCCGGCCGATCGCATTTGTCACGACGC 97
BSNT_05502___ 96 --ACTTTCTTCAGAAGGAGCGGTCAATGCCGCGCCTTTCAGTTTTTATAA 143
.|.|.|.||| |.||.||.||.||.||.|||||.||||||||.|||||
RBAM_033240__ 98 GGTCATCCATCA-ACGGCGCCGTAAACGCGGCGCCCTTCAGTTTCTATAA 146
BSNT_05502___ 144 CGTCGTCAGCTCAGATCCTCCGCTTCTCAGTATTTCTGTTAACAGGACGG 193
|||.|||..|.||||.||.||||||||....||.||.||.|.|.|..|||
RBAM_033240__ 147 CGTTGTCTCCGCAGAACCGCCGCTTCTGGCCATCTCAGTCAGCCGCGCGG 196
BSNT_05502___ 194 AAGGACGCCAAAAAGATACAGCGCGAAACGCAGT-GGAGAACGGAGAATT 242
|.||.||.||.|||||.||.|||.||||||||.| |...|.||| |||||
RBAM_033240__ 197 ACGGTCGGCAGAAAGACACCGCGAGAAACGCACTCGCTCATCGG-GAATT 245
BSNT_05502___ 243 TGTCGTTCATGTCAGTGATGAAGCCATCATTGAAGATATCAATGAAACAG 292
.||.||.||.|||||||||||..||||.||||||||.||.||..||||.|
RBAM_033240__ 246 CGTTGTGCACGTCAGTGATGAGTCCATTATTGAAGACATTAACAAAACGG 295
BSNT_05502___ 293 CTGCAA-GCTTAAGGCCGGATGAAAGCGAGCTT------ACACGCACCTC 335
|.|||| ||||.| .||.||||..||.||.||| ||| .||||
RBAM_033240__ 296 CGGCAAGGCTTGA-TCCTGATGTCAGTGAACTTGGCATGACA--GACCT- 341
BSNT_05502___ 336 GCTTCATCCTGTTGAAAGCAAAGCTGTTTCA-----GTTCCCGGCATTAA 380
|.||| |||.|| |.|||..||.|| ||||||||.||.||
RBAM_033240__ 342 ------TTCTG-TGACAG-ACAGCGCTTGCATCAGCGTTCCCGGTATAAA 383
BSNT_05502___ 381 GGAAGCCCGCGTTCGCTTTGAGTGCAAATTAGAGCGGCATATTACCTTTG 430
.|||||....||..|.|||||.||.|.|.|.||.||.|||.||.|.||..
RBAM_033240__ 384 AGAAGCAAAAGTGAGGTTTGAATGTATACTCGAACGCCATCTTCCGTTCC 433
BSNT_05502___ 431 ACAATGATCAAGGCATC------ACTACAGCAGATCTGCTCATCGGAAGG 474
|.||||| ||.| ||.||..||||.||..|||||||.||.
RBAM_033240__ 434 AAAATGA------CAGCGGAGAAACGACGACAGACCTCATCATCGGCAGA 477
BSNT_05502___ 475 GTTGTCTGCTTCCACCTAGATGAAAAGGTGTATGATGCAGAAAAGGGATA 524
||.||.||.||.||..|..||||..|.||.|||||.||.||.||.||.||
RBAM_033240__ 478 GTCGTTTGTTTTCATTTGAATGACCAAGTATATGACGCCGATAAAGGCTA 527
BSNT_05502___ 525 TATTTTAACG----GATGAATTAAAACCTGCCTCACGATTGGCGGGAAAT 570
.|| ||| |||||..|.||.|||||..||.|..|.|||||.|||
RBAM_033240__ 528 CAT----ACGGACAGATGAGCTGAAGCCTGCGGCAAGGCTCGCGGGGAAT 573
BSNT_05502___ 571 CACTATGCCAAGCTGGGGGAAGA-ATTCACACTGATTCGTCCCAGCTGA 618
.|.||.||||..|| .||||||| ||..||.||..|.||.||.|.||||
RBAM_033240__ 574 GAATACGCCAGACT-CGGGAAGACATATACGCTTGTCCGCCCGACCTGA 621
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