Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05496 and RBAM_033210
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:59
# Commandline: needle
# -asequence dna-align/BSNT_05496___cotB.1.9828.seq
# -bsequence dna-align/RBAM_033210___cotB.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05496___cotB-RBAM_033210___cotB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05496___cotB-RBAM_033210___cotB.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05496___cotB
# 2: RBAM_033210___cotB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1133
# Identity: 624/1133 (55.1%)
# Similarity: 624/1133 (55.1%)
# Gaps: 328/1133 (28.9%)
# Score: 1776.0
#
#
#=======================================
BSNT_05496___ 1 ATGAGCAAGAGAAGAATGAAGTATCATTCAAATGATGAAATA-------- 42
||||| |.|.||||
RBAM_033210__ 1 ---------------ATGAA--------------ACGCAATACGAAGCGG 21
BSNT_05496___ 43 ------TCTTATTATAACTTTTTGCATTCAATGAAAGATAAAATTGTTAC 86
|||.||.|.||||||||||||.|||||.|||..|||.|..||||
RBAM_033210__ 22 CAGCGGTCTGATGACAACTTTTTGCATGCAATGGAAGGAAAAGTAATTAC 71
BSNT_05496___ 87 TGTATATCGTGGAGGTCCGGAATCTAAAAAAGGAAAATTAGCTGCTGTAA 136
|||.||.||.|||||.|||||.||.||.|.|||.|.||||||.|...|..
RBAM_033210__ 72 TGTCTACCGGGGAGGCCCGGAGTCCAAGACAGGGAGATTAGCAGACATTC 121
BSNT_05496___ 137 AATCAGATTATATTGCTTTACAAGCTGAAAAAAAAATAATTTATTATCAG 186
||||.||||||||.|||.|.||.|.|||.||.|||||..||||||||||.
RBAM_033210__ 122 AATCGGATTATATCGCTCTTCAGGTTGATAATAAAATCGTTTATTATCAA 171
BSNT_05496___ 187 TTGGAGCATGTGAAAAGTATTACTGAGGATACCAAT-AATAGCACCACAA 235
|.|.|.||||||||||||.|.||.||..||||.|.| || |||..|.
RBAM_033210__ 172 TGGAAACATGTGAAAAGTGTGACGGAAAATACGAGTGAA----ACCGTAT 217
BSNT_05496___ 236 C--------AATTG--AGACTGAGGAAATGCCCGACGCTGACGATTTTCA 275
| ||..| |||.||.|.|| |.|||||.||||||||
RBAM_033210__ 218 CGCCGGCCGAAGCGGCAGAATGTGAAA-------AAGCTGATGATTTTCA 260
BSNT_05496___ 276 TAG-CTTAAT----CGGACAATTAATGAACCAAT----CAGTTCAATTTA 316
|| |.|.|| ||| ||| |||||| |.||.|||||.|
RBAM_033210__ 261 -AGACCTGATCAGCCGG-------ATG-ACCAATCGCACGGTGCAATTGA 301
BSNT_05496___ 317 ATCAAGGGGGTCCGGAATCTAAAAAAGGAAGATTGGTCTGGCT------- 359
||||.||.|||||||||||.||||.||||| .|||
RBAM_033210__ 302 ATCAGGGAGGTCCGGAATCGAAAAGAGGAA---------AGCTTCACGAA 342
BSNT_05496___ 360 ---GGGAGATGATT---ACGCTGCGTTAAACACAAATGAGGATGGGGTAG 403
||| ||||||| .|| |||...||||..|| ||.||.||..|.|
RBAM_033210__ 343 ACAGGG-GATGATTTTCTCG-TGCTGGAAACGGAA--GATGACGGAATTG 388
BSNT_05496___ 404 TGTATTTTAA----TATCCATCACATAAAGAGTATAAGTAAACATGAGCC 449
|.|||||||| .| ||||..|| |||| |||.|||.
RBAM_033210__ 389 TATATTTTAACGCCGA-CCATGTCA-AAAG------------CATCAGCG 424
BSNT_05496___ 450 CGATTTGAAAATAGA--AGGAC-----AGA-------CGCC----ATCAG 481
|| |||.| ||| ||||| ||| |||| ||
RBAM_033210__ 425 CG----GAACA-AGAAGAGGACGGCCAAGAGGAGGAGCGCCCGGAAT--- 466
BSNT_05496___ 482 GTGTCTTGGAA--GCTGATTATTTAAGCGAGGTTTTTAAGAGTCTGACTC 529
|||.|| ||||||.||||...||...|.|||||..|.||||..|
RBAM_033210__ 467 -----TTGAAATGGCTGATGATTTTCACGGCATATTTAAACGCCTGATCC 511
BSNT_05496___ 530 ATAAATGGGTTTCAATTAATCGTGGAGGTCCGGAAGCCATTGAGGGTATC 579
|.||||||||.||.||.||.||.||||||||.||||||.||||.|||||.
RBAM_033210__ 512 ACAAATGGGTATCCATCAACCGCGGAGGTCCTGAAGCCGTTGAAGGTATA 561
BSNT_05496___ 580 CTTGTAGATAATGCCGACGGCCATTATACTATAGTGAAAAATCAAGAGGT 629
|||||.||||||.||||||||||.||.|||.|.||||||.||.||||.||
RBAM_033210__ 562 CTTGTGGATAATTCCGACGGCCACTACACTCTTGTGAAAGATAAAGAAGT 611
BSNT_05496___ 630 GCTTCGCATCTATCCTTTTCACATAAAAAGCATCAGCTTAGGCCCAAAAG 679
|||.||.||.|||||||||||.||.||.|||||||||..|||..||||||
RBAM_033210__ 612 GCTGCGGATTTATCCTTTTCATATCAAGAGCATCAGCGAAGGGGCAAAAG 661
BSNT_05496___ 680 GGTCGTACAAAAAAGAGGATGA--AAAGA--ATGAGCATCAAAATCAGGA 725
|..|....||||||||||| || ||||| |.|||.||.||..|.||.|
RBAM_033210__ 662 GAGCAGCTAAAAAAGAGGA-GAATAAAGACGAAGAGAATAAAGGTGAGAA 710
BSNT_05496___ 726 AGACAGCGATGATACAGATCAAAAAGAAGAAGTGTACAGCAGTTCGTTAA 775
|||.||||..| |||||||
RBAM_033210__ 711 AGAGAGCGCCG------------AAGAAGA-------------------- 728
BSNT_05496___ 776 TTTCTTCAAAGCCATATAGCTCATCAAGTTCATCAAAATCATCTAAACGA 825
||||| |.|||.||| |||| |..|||
RBAM_033210__ 729 -------AAAGC-------CGCATGAAG--------AATC----ACGCGA 752
BSNT_05496___ 826 TCATCAAAATCTTCAGATCATCGATCATCAACATCATACAGCTCATCAGG 875
|||.||.|| |||
RBAM_033210__ 753 --------------AGAGCAGCG-------------TAC----------- 764
BSNT_05496___ 876 TTCAAAGAGTTCATCAAAATCATCTAAACGATCGCCAAGATCATCAGATT 925
.||.||||||...|||..|||
RBAM_033210__ 765 ------------------TTCCTCTAAAAAGTCGAAAAG----------- 785
BSNT_05496___ 926 ATCAATCATCAAGATCACCAGGTTATTCAAGTTCAAT----AAAAAGTTC 971
|||||||||||| .||||.|| |||| |
RBAM_033210__ 786 ----ATCATCAAGATC-------------CGTTCGATCCTCAAAA----C 814
BSNT_05496___ 972 AGGAAAACAAAAGGAAGATTATAGCTATGAAACGATTGTCAGAACGATAG 1021
.|||.| ||.|||....|||||||||.|..||..|..|.||.||.||||
RBAM_033210__ 815 GGGAGA--AAGAGGTCTCTTATAGCTACGCCACTGTATTAAGGACAATAG 862
BSNT_05496___ 1022 ACTATCACTGGAAA------CGTAAAT-ATTAA 1047
|.||||..|||||| ||||||| |
RBAM_033210__ 863 ATTATCGGTGGAAACACGGCCGTAAATGA---- 891
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