Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05493 and RBAM_033190
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:59
# Commandline: needle
# -asequence dna-align/BSNT_05493___ywrK.1.9828.seq
# -bsequence dna-align/RBAM_033190___ywrK.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05493___ywrK-RBAM_033190___ywrK.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05493___ywrK-RBAM_033190___ywrK.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05493___ywrK
# 2: RBAM_033190___ywrK
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1358
# Identity: 968/1358 (71.3%)
# Similarity: 968/1358 (71.3%)
# Gaps: 55/1358 ( 4.1%)
# Score: 3247.5
#
#
#=======================================
BSNT_05493___ 1 ------TTGCTCGCTTTTTTCGTAACAATGATTTTTATTTTCTGGAGACC 44
.||.|..||||.||.||.||.||.||||||||.||.||||||||
RBAM_033190__ 1 TTGACCCTGATTTCTTTCTTTGTGACCATTATTTTTATATTTTGGAGACC 50
BSNT_05493___ 45 AAAAGGACTAAATGAAGCTATCCCCGCCACATTTGGTGCTTTAATGGTTT 94
....|||.||||||||||..|.||.||..|..|.||.||..|..|.||||
RBAM_033190__ 51 CGGGGGATTAAATGAAGCCGTTCCGGCGTCGCTGGGCGCCATTCTCGTTT 100
BSNT_05493___ 95 TATTGTGCGGAAGTGTGTCATTGGCA-GACTTAGGGGAAATCGGAACAAA 143
|.||.|||||||..||.||.|| .|| ||.||.|||||.||.||..||||
RBAM_033190__ 101 TGTTATGCGGAACCGTTTCCTT-TCATGATTTGGGGGATATAGGGTCAAA 149
BSNT_05493___ 144 AGTCACGGGTGCATCGGTTACAATCCTTGCCACTATGATTATGGCCATTG 193
||||||.||.||.||..|.||.||..|..||||.|||||||||||.||.|
RBAM_033190__ 150 AGTCACCGGAGCCTCAATAACCATTATCTCCACAATGATTATGGCGATCG 199
BSNT_05493___ 194 CACTAGAAAGCTTTGGTTTCTTTTATTGGGTGGCTGCAAAACTGCTCCAA 243
|.||.||||||||.|||||.|||.|.||||.|||.||.||||||||.||.
RBAM_033190__ 200 CGCTGGAAAGCTTCGGTTTTTTTAACTGGGCGGCGGCCAAACTGCTTCAC 249
BSNT_05493___ 244 CAATCCAAGGGTTCAGGCATCAAGCTTTTTTGGCTAACCAATTTGCTCTG 293
|...|||||||.||.||||||..||||||||||||.|||||..|||||||
RBAM_033190__ 250 CGCGCCAAGGGATCGGGCATCCGGCTTTTTTGGCTGACCAACCTGCTCTG 299
BSNT_05493___ 294 CTTTCTC-ATGACCATTTTCCTGAATAATGATGGGAGCATTTTGATCACA 342
|||.|| |||||..|.||.|||||||||||.||.|||.|.||.|||||.
RBAM_033190__ 300 -TTTTTCAATGACGCTCTTTCTGAATAATGACGGCAGCGTCTTAATCACC 348
BSNT_05493___ 343 ACTCCAATCCTTTTGC---TTGTACTAAAATATTTAGGTTTAAAAAAACA 389
|||||.| ||||.| |.||..||.|||||.|.||..|.||||.|||
RBAM_033190__ 349 ACTCCTA---TTTTACTATTGGTCTTACAATATCTCGGACTTAAAAGACA 395
BSNT_05493___ 390 TCAAAAAACCCCATATTTATTAAGCGGTGTTTTAATAGCCACAGCCTCTA 439
|||.|||||.||.||||||.|||||||.||.|||||.||.||.||..|.|
RBAM_033190__ 396 TCAGAAAACACCGTATTTAATAAGCGGCGTATTAATTGCGACGGCGGCAA 445
BSNT_05493___ 440 GCGCACCGATTGGCGTAAGTAATATTGTTAATTTAATTTCTCTCAAAATC 489
||.|.|||||.|||||.||||||||.||.||||||||||||||||||||.
RBAM_033190__ 446 GCACCCCGATCGGCGTCAGTAATATCGTCAATTTAATTTCTCTCAAAATG 495
BSNT_05493___ 490 ATTGGAATGGATCTATATCTTCACACTGCCATGATGTTTGTCCCTAGTAT 539
||.||.|||||.||.|||.|..||||....|||||||||.||||..|.|.
RBAM_033190__ 496 ATAGGCATGGACCTTTATTTGTACACCAATATGATGTTTATCCCCGGCAC 545
BSNT_05493___ 540 GATGGGACTCATTTTTATGACTTGTCTACTGTTT-ATGTTCTTTTATAAA 588
|.|||||||..|.||||||.|.|.|||.|||||| ..||| |||||....
RBAM_033190__ 546 GCTGGGACTGGTGTTTATGGCCTTTCTGCTGTTTGCCGTT-TTTTACCGC 594
BSNT_05493___ 589 CGTCTTCCC--AAGAGCCTGCCAGATATACCGAGCCATTTTCAGTCTCTG 636
||| ||.|| ||.|| ||.||.|||||.|||...||||||.|.||.|||
RBAM_033190__ 595 CGT-TTGCCGAAACAG-CTCCCCGATATTCCGGTTCATTTTGATTCCCTG 642
BSNT_05493___ 637 CGGCATAGAAGGTACCATCCTCTTCATTCGCCATCAGCTCCTTTACCAGA 686
...||.|.|.|.||.|||||.|||||..|.||..||| |||.||
RBAM_033190__ 643 GAACACAAACGATATCATCCGCTTCAGCCTCCGCCAG-------ACCCGA 685
BSNT_05493___ 687 ACGAAATCA----AACAAAAATCATGTTGTTTGTGCTT--GCATTTGTTT 730
.|.|||.|| .||.||.||||||| ||||||.|| ||||||||.|
RBAM_033190__ 686 CCCAAAACAGCCGTACGAACATCATGT--TTTGTGTTTTGGCATTTGTAT 733
BSNT_05493___ 731 TTCTCGTCAGAATGAGTCTATTTGCAGCATCATATACCGGTATTTCTGTT 780
|..|||||.|.||.|||||.||||||||.||.||.|.|||.||.||.|||
RBAM_033190__ 734 TGTTCGTCCGGATCAGTCTGTTTGCAGCTTCTTACAACGGCATATCCGTT 783
BSNT_05493___ 781 CCTCTAGTCGCTGTCATCGGATCTTTTATCCTG-TTGAGCTGGAGATGGA 829
.|.||.||.|||||||||.|.||..|.|||||| ||| |||||||||||.
RBAM_033190__ 784 TCGCTCGTGGCTGTCATCAGTTCAGTCATCCTGCTTG-GCTGGAGATGGT 832
BSNT_05493___ 830 TTTATTTCAAAACCTCCCCAAAAGACTTGTTATATAAATCGCCTTGGCAC 879
|||||||.||||.|...||...|||.||.|||...|||.||||||||||.
RBAM_033190__ 833 TTTATTTAAAAATCGGACCGGCAGATTTATTAAGGAAAGCGCCTTGGCAT 882
BSNT_05493___ 880 ATTTTTATATTCGCTTTTACTATGTATGTCTTAATTTATGGTCTGCATAA 929
||.|||||.||.||.||.||.|||||..|..|.||.||.||.||||||||
RBAM_033190__ 883 ATCTTTATTTTTGCCTTCACGATGTACATTATCATCTACGGACTGCATAA 932
BSNT_05493___ 930 TATTGGATTCACAGAGTTACTTGTGAATTATTTTGAACCTGTGGTTTCTG 979
|||.|||.|.||.|.|.|.|||||..|.|.|.||||.|||...||.||..
RBAM_033190__ 933 TATCGGACTGACGGCGCTGCTTGTTCAGTCTATTGAGCCTTATGTCTCAC 982
BSNT_05493___ 980 GAAGCCTCGCCCA---TGCAACTTTCGCATCA--GGTATCTCTACTTCAG 1024
.||||.|.||||| ||||.|| ||.| ||.||..||||.||.|
RBAM_033190__ 983 AAAGCATTGCCCACGCTGCATCT-----ATTATGGGCATTGCTACATCCG 1027
BSNT_05493___ 1025 TTTTTTCTAATCTCTTTAACAACCATCCAGCGTTAATGATCAGTACTTTT 1074
|..|.||||||.|.||.||.||||||||.||.|||||||||||.|||||.
RBAM_033190__ 1028 TCCTCTCTAATTTGTTCAATAACCATCCCGCCTTAATGATCAGCACTTTG 1077
BSNT_05493___ 1075 ACCTTAACTGAAATGACCCTGAATCCTTCAACAACAAAAATCATCTACTT 1124
||.||||||||||||.||.|..|.||.|.|||...|||||||||.||..|
RBAM_033190__ 1078 ACATTAACTGAAATGTCCATCGACCCATTAACCGTAAAAATCATTTATCT 1127
BSNT_05493___ 1125 GGCAAATATTATCGGCAGTGATATCGGTTCATTATTATTACCTATGGGAA 1174
|||.|||||||||||||||||||||||.|||||..|..|.||.||.||.|
RBAM_033190__ 1128 GGCTAATATTATCGGCAGTGATATCGGATCATTGCTTCTGCCGATCGGGA 1177
BSNT_05493___ 1175 CCTTAGCAACGCTTATTTGGATGCATATATTAAAACAGCATGATGAAAGT 1224
|.|||||.|||||.||.|||||||||||..|.|.||||||.|..||||..
RBAM_033190__ 1178 CATTAGCCACGCTGATCTGGATGCATATCATCAGACAGCACGGCGAAAAA 1227
BSNT_05493___ 1225 ATTTCATGGGGCGAATATATAAAAACGACCATTATCATCATTCCGCTGAC 1274
.||||.|||...||||||||.|||||||||||||||.|..|.||.||.||
RBAM_033190__ 1228 GTTTCTTGGTCAGAATATATCAAAACGACCATTATCGTTGTCCCTCTCAC 1277
BSNT_05493___ 1275 TGTTCTTTTTA-CGTTAACATGTTTATATTTTTGGATCAGTTGGTTATTT 1323
.||..|.|||| |.|||.|.| |||||||.|.|||||||||||| ||||
RBAM_033190__ 1278 CGTCGTATTTACCATTACCGT-TTTATATGTCTGGATCAGTTGG--ATTT 1324
BSNT_05493___ 1324 --CTTTAG 1329
||||||
RBAM_033190__ 1325 ACCTTTAG 1332
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