Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05487 and RBAM_033170
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:59
# Commandline: needle
# -asequence dna-align/BSNT_05487___alsS.1.9828.seq
# -bsequence dna-align/RBAM_033170___alsS.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05487___alsS-RBAM_033170___alsS.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05487___alsS-RBAM_033170___alsS.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05487___alsS
# 2: RBAM_033170___alsS
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1750
# Identity: 1349/1750 (77.1%)
# Similarity: 1349/1750 (77.1%)
# Gaps: 68/1750 ( 3.9%)
# Score: 5094.0
#
#
#=======================================
BSNT_05487___ 1 GTGTTGACAAAAGCAACAAAAGAACAAAAATCCCTTGTGAAAAACA--GA 48
||||||.|||||||||||||.||||.||||.|| |.|||||||.| |.
RBAM_033170__ 1 GTGTTGGCAAAAGCAACAAATGAACTAAAAACC--TCTGAAAAAAATCGG 48
BSNT_05487___ 49 GGGGCGGAGCTTGTTGTTGATTGCTTGGTGGAGCAAGGTGTCACACATGT 98
||||||||||||||||||||||||||.|||||||||||||||||||||||
RBAM_033170__ 49 GGGGCGGAGCTTGTTGTTGATTGCTTAGTGGAGCAAGGTGTCACACATGT 98
BSNT_05487___ 99 ATTTGGCATTCCAGGTGCAAAAATTGATGCGGTATTTGACGCTTTACAAG 148
.|||||||||||.|||||||||||||||||.||||||||.||.|||.|||
RBAM_033170__ 99 TTTTGGCATTCCGGGTGCAAAAATTGATGCAGTATTTGATGCGTTAAAAG 148
BSNT_05487___ 149 ATAAAGGACCTGAA-----ATTATCGTTGCTCGGCACGAACAAAACGCAG 193
|||||||||||||| .||| ||| ||.||||||||.|||||.|
RBAM_033170__ 149 ATAAAGGACCTGAACTGGTTTTA----TGC-CGTCACGAACAGAACGCTG 193
BSNT_05487___ 194 CATTCATGGCCCAAGCAGTCGGCCGTTTAACTGGAAAACCGGGAGTCGTG 243
||||.|||||....||.|||||..|..|.|||||||||||.||.|| .||
RBAM_033170__ 194 CATTTATGGCTGCGGCTGTCGGAAGACTGACTGGAAAACCAGGCGT-TTG 242
BSNT_05487___ 244 T-TAGTCACATCAGGACCGGGTGCCTCTAACTTGGCAACAGGCCTGTTGA 292
| |.||.||.|||||.|||||.||.||.||||||||.||.|||.||||.|
RBAM_033170__ 243 TCTCGTTACTTCAGGCCCGGGGGCATCCAACTTGGCGACCGGCTTGTTAA 292
BSNT_05487___ 293 CAGCGAACACTGAAGGAGACCCTGTCGTTGCGCTTGCTGGAAACGTGATC 342
|.||.||.||.|||||.||.||.||.||.|||||.||.||.|||||.||.
RBAM_033170__ 293 CGGCTAATACAGAAGGTGATCCGGTAGTGGCGCTGGCGGGTAACGTAATT 342
BSNT_05487___ 343 CGTGCAGATCGTTTAAAACGGACACATCAATCTTTGGATAATGCGGCGCT 392
||.|||||.||.||||||||||||||.|||||.|||||.|||||||||||
RBAM_033170__ 343 CGCGCAGACCGGTTAAAACGGACACACCAATCATTGGACAATGCGGCGCT 392
BSNT_05487___ 393 ATTCCAGCCGATTACAAAATACAGTGTAGAAGTTCAAGATGTAAAA---A 439
|||.|||||||||||||||||||||||||||||.||.|| ||.| |
RBAM_033170__ 393 ATTTCAGCCGATTACAAAATACAGTGTAGAAGTACAGGA---AACAGGGA 439
BSNT_05487___ 440 ATATACCGGAAGCTGTTACAAATGCGTTTAGGATAGCGTCAGCAGGGCAG 489
|||||||.|||||.||.|||||.||.||.|||..||||||||||||.|||
RBAM_033170__ 440 ATATACCAGAAGCGGTAACAAACGCCTTCAGGGCAGCGTCAGCAGGTCAG 489
BSNT_05487___ 490 GCTGGGGCCGCTTTTGTGAGCTTTCCGCAAGATGTTGTGAATGAAGTCAC 539
||.||.||.|||||.||||||||||||||.|||||||||||||||.||||
RBAM_033170__ 490 GCAGGCGCGGCTTTCGTGAGCTTTCCGCAGGATGTTGTGAATGAAATCAC 539
BSNT_05487___ 540 AAATACGAAAAACGTGCG-TGCTGTTGCAGCACCAAAACTCGGTCCTGCA 588
||||..|||||||||.|| .|| |||.|.||.||.||||..||.||||||
RBAM_033170__ 540 AAATGTGAAAAACGTACGCAGC-GTTCCGGCGCCGAAACAAGGCCCTGCA 588
BSNT_05487___ 589 GCAGATGATGCAATCAGTGCGGCCATAGCAAAAATCCAAACAGCAAAACT 638
.|.||.||.||..||||.|||||.||.||.||||||||.||.||.|||||
RBAM_033170__ 589 CCGGAAGAAGCGGTCAGCGCGGCTATCGCGAAAATCCAGACGGCGAAACT 638
BSNT_05487___ 639 TCCTGTCGTTTTGGTCGGCATGAAAGGCGGAAGACCGGAAGC----AATT 684
|||.||..|.||.|||||||||||||||||.||||||||.|| ||..
RBAM_033170__ 639 TCCCGTTCTGTTAGTCGGCATGAAAGGCGGGAGACCGGAGGCGGTAAAAC 688
BSNT_05487___ 685 AAAGCGGTTCGCAA---GCTTTTGAAAAAGGTTC--AGCTTCCATTTGTT 729
||| |.||||| ||||...|||| | |.||.||.||.||.
RBAM_033170__ 689 AAA----TCCGCAAACTGCTTGCCAAAA-----CAAAACTGCCTTTCGTA 729
BSNT_05487___ 730 GAAACATATCAAGCTGCCGGTACCCTTTCTAGAGATTTAGAGGATCAGTA 779
|||||.||.||||..|||||.||..|.||.|||||..|.||.||.||.||
RBAM_033170__ 730 GAAACGTACCAAGGGGCCGGCACATTGTCCAGAGAGCTGGAAGACCAATA 779
BSNT_05487___ 780 TTTTGGCCGTATCGGTTTGTTCCGCAACCAGCCTGGCGATTTACTGCTAG 829
|||.|||||.|||||..||||||||||||||||.||||||.|.|||||.|
RBAM_033170__ 780 TTTCGGCCGGATCGGACTGTTCCGCAACCAGCCGGGCGATCTTCTGCTTG 829
BSNT_05487___ 830 AGCAGGCAGATGTTGTTCTGACGATCGGCTATGACCCAATTGAATATGAT 879
|.|||||.|||||.||..|.||||||||.|||||.||.||||||||.|||
RBAM_033170__ 830 AACAGGCGGATGTCGTATTAACGATCGGTTATGATCCGATTGAATACGAT 879
BSNT_05487___ 880 CCAAAATTCTGGAATGTCAATGGAGACCGGACAATTATCCATTTAGACGA 929
||.||.||||||||.||.||.||.|||||..|.|||||||||.|.|||||
RBAM_033170__ 880 CCGAAGTTCTGGAACGTAAACGGTGACCGTGCTATTATCCATCTTGACGA 929
BSNT_05487___ 930 GATTATCGCTGACATTGATCATGCTTACCAGCCTGATCTTGAATTGATCG 979
.||....||.||.|||||||||||.||.|||||.||..|.|||||..|.|
RBAM_033170__ 930 AATCCAGGCCGATATTGATCATGCCTATCAGCCGGAATTAGAATTATTAG 979
BSNT_05487___ 980 GTGACAT-TCCGTCCACGATTAATCATATCGAACACGATGCTGTGAAAGT 1028
|.||.|| .||| |.|||.||||.||.||.||||||||.|||||||.|.|
RBAM_033170__ 980 GCGATATCGCCG-CTACGGTTAAACAAATTGAACACGACGCTGTGACATT 1028
BSNT_05487___ 1029 GGA-ATTTGCAGAGCGTGAGCAGAAAATCCTTTCTGATTTAAAACAATAT 1077
.|| ||..|||| .|||||.||..||.|.||....||.||||||| |.
RBAM_033170__ 1029 TGATATGGGCAG-CCGTGAACAAGAAGTGCTGAGCGAATTAAAAC---AG 1074
BSNT_05487___ 1078 ATGCAT----GAAGGTGAGCAGGTGCCTGCAG-----ATTGGAAATCAGA 1118
|||| | ||..|.|||.|||.||| .|| || |||||.||
RBAM_033170__ 1075 ATGC-TCACAGACAGCGAGAAGGCGCC--AAGCGACCAT---AAATCCGA 1118
BSNT_05487___ 1119 CAGAGCGCACCCTCTTGAAATCGTTAAAGAGTTGCGTAATGCAGTCGATG 1168
|||||.|||.|||||..|||||||..||||..||||.||||||.|.||||
RBAM_033170__ 1119 CAGAGTGCATCCTCTGCAAATCGTCCAAGAACTGCGCAATGCAATTGATG 1168
BSNT_05487___ 1169 ATCATGTTACAGTAACTTGCGATATCGGTTCGCACGCCATTTGGATGTCA 1218
|..|.||.||.||.|||||||||||||||||||||||.||.||||||||.
RBAM_033170__ 1169 ACGACGTAACCGTCACTTGCGATATCGGTTCGCACGCGATCTGGATGTCC 1218
BSNT_05487___ 1219 CGTTATTTCCGCAGC-TACGAGCCGTTAACATTAATGATCAGTAACGGTA 1267
||.||.|||||| || ||.||||||.|.|.|.|..|||||||.|||||.|
RBAM_033170__ 1219 CGCTACTTCCGC-GCTTATGAGCCGCTGAAACTGTTGATCAGCAACGGCA 1267
BSNT_05487___ 1268 TGCAAACACTCGGCGTTGCGCTTCCTTGGGCAATCGGCGCTTCATTGGTG 1317
||||.|||.|.|||||.||||||||||||||.||.|.|||..||||||||
RBAM_033170__ 1268 TGCAGACATTGGGCGTAGCGCTTCCTTGGGCGATTGCCGCCACATTGGTG 1317
BSNT_05487___ 1318 AAACCGGGAGAAAAAGTGGTTTCTGTCTCTGGTGACGGCGGTTTCTTATT 1367
||.|||||.||||||||.||.||.||.||.||.|||||.||.|||.|.||
RBAM_033170__ 1318 AATCCGGGTGAAAAAGTCGTATCCGTTTCAGGAGACGGAGGATTCCTGTT 1367
BSNT_05487___ 1368 CTCAGCAATGGAATTAGAGACAGCGGTACGACTAAAAGCACCAATTGTAC 1417
|||.|||||||||||.||.||.||.||.||..|||||||.||.||.||.|
RBAM_033170__ 1368 CTCTGCAATGGAATTGGAAACGGCAGTCCGCTTAAAAGCGCCGATCGTTC 1417
BSNT_05487___ 1418 ACATTGTATGGAACGACAGCACATATGACATGGTTGCATTCCAGCAATTG 1467
||.||||||||||.||||||||||||||.|||||.||||||||||||.||
RBAM_033170__ 1418 ACCTTGTATGGAATGACAGCACATATGATATGGTCGCATTCCAGCAAATG 1467
BSNT_05487___ 1468 AAAAAATATAACCGTACATC-TGCGGTCGATTTCGGAAATATCGATATCG 1516
|||||||||||||||||.|| ||| ||.|||||||||||.||.||.||||
RBAM_033170__ 1468 AAAAAATATAACCGTACGTCATGC-GTAGATTTCGGAAACATTGACATCG 1516
BSNT_05487___ 1517 TGAAATATGCGGAAAGCTTCGGAGCGACTGGCTTGCGCGTAGAATCACCA 1566
|.||||||||.|||||||||||.||.||.|||||||||||.||.|||||.
RBAM_033170__ 1517 TAAAATATGCAGAAAGCTTCGGCGCCACCGGCTTGCGCGTTGAGTCACCG 1566
BSNT_05487___ 1567 GACCAGCTGGCAGATGTTCTGCGTCAAGGCATGAACGCTGAAGGTCCTGT 1616
||.|||||||||||.||.||||...|||||.|||||.|.|||||||||||
RBAM_033170__ 1567 GAACAGCTGGCAGACGTGCTGCAAAAAGGCTTGAACACAGAAGGTCCTGT 1616
BSNT_05487___ 1617 CATCATCGATGTCCCGGTTGACTACAGTGATAACATTAATTTAGCAAGTG 1666
||||||.||..|.||.||.||.||||||||.||..|..|||||.||||.|
RBAM_033170__ 1617 CATCATTGACATTCCTGTCGATTACAGTGACAATGTCCATTTATCAAGCG 1666
BSNT_05487___ 1667 ACAAGCTTCCGAAAGAATTCGGGGAACTCATGAAAACGAAAGCTCTCTAG 1716
|||.|||||||||..|||||...|||...||||||.|.||||||||||||
RBAM_033170__ 1667 ACATGCTTCCGAAGCAATTCAAAGAAAAAATGAAAGCAAAAGCTCTCTAG 1716
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