Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05484 and RBAM_033150

See Amino acid alignment / Visit BSNT_05484 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:58
# Commandline: needle
#    -asequence dna-align/BSNT_05484___ywrO.1.9828.seq
#    -bsequence dna-align/RBAM_033150___ywrO.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05484___ywrO-RBAM_033150___ywrO.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05484___ywrO-RBAM_033150___ywrO.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05484___ywrO
# 2: RBAM_033150___ywrO
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 549
# Identity:     375/549 (68.3%)
# Similarity:   375/549 (68.3%)
# Gaps:          36/549 ( 6.6%)
# Score: 1243.0
# 
#
#=======================================

BSNT_05484___      1 ---------ATGAAAATATTGGTTTTGGCAGTTCATCCTCATATGGAGAC     41
                              .|||||.|||||||.||.||..||||||||.|.|||.|.|.
RBAM_033150__      1 GTGGTAGCTGTGAAAGTATTGGTATTAGCGATTCATCCTGACATGAACAA     50

BSNT_05484___     42 CTCAGTTGTCAATAAGGCGTGGGCTGAGGAATTGAGTAAACATGACAATA     91
                     |||||..|||||||||||||||.|.||.|||||.|..||.|||||..|.|
RBAM_033150__     51 CTCAGCGGTCAATAAGGCGTGGACAGAAGAATTAAAAAATCATGATGAAA    100

BSNT_05484___     92 TCACAGTACGGGATCTTTATAAGGAATACCCGGATG---AAGCGATAGAT    138
                     |.||.||.||.||.||||||||.|||||.|||||.|   ||   ||||||
RBAM_033150__    101 TTACGGTCCGTGAGCTTTATAAAGAATATCCGGACGGGAAA---ATAGAT    147

BSNT_05484___    139 GTTGCGAAGGAACAGCAGTTGTGCGAGGAATACGATCGGATTGTCTTTCA    188
                     |..|..|||||||.||||.||||.||..|.||.||.|||||.||.|||||
RBAM_033150__    148 GCGGAAAAGGAACGGCAGCTGTGTGAACAGTATGACCGGATCGTATTTCA    197

BSNT_05484___    189 ATTCCCGCTATATTGGTACAGCTCTCCGCCGCTCTTGAAAAAATGGCAGG    238
                     |||||||||.|||||||||||..|.||.|||||.||.||||.||||..||
RBAM_033150__    198 ATTCCCGCTGTATTGGTACAGTGCGCCTCCGCTTTTAAAAACATGGATGG    247

BSNT_05484___    239 ATCTTGTGCTGACTTATGGCTGGGCTTTTGGTTCAGAAGGAAATGCCTTG    288
                     |||.|||||||.|.|||||||||||||..||.||..|||||||.||..||
RBAM_033150__    248 ATCATGTGCTGGCGTATGGCTGGGCTTACGGCTCCAAAGGAAAGGCGCTG    297

BSNT_05484___    289 CATGGCAAGGAGCCGATGCTGGCTGTATCAACAGGGAGCGAAGCGGAAAA    338
                     ||.|||||.||...|.||||||||||.||...|||...||.||.|||...
RBAM_033150__    298 CACGGCAAAGAATTGCTGCTGGCTGTTTCCGTAGGTGCCGGAGAGGATGC    347

BSNT_05484___    339 ATATCAAGCGGGCGGAGCAAATCATTACTCGATCAGTGAGCTATTGAAAC    388
                     ||||||.||.|||||..|.||.||||..||..|.||.|||||.||.|..|
RBAM_033150__    348 ATATCAGGCAGGCGGGTCTAACCATTTTTCACTGAGCGAGCTCTTAAGGC    397

BSNT_05484___    389 CATTTCAGGCCACGAGTAATCTGATCGGTATGAAGTATCTGCCTCCATAT    438
                     |.||||||||.|.|..||||.|.|..|||||||..|||.||||..|.|..
RBAM_033150__    398 CGTTTCAGGCAATGGCTAATTTTACGGGTATGACCTATTTGCCGGCTTTC    447

BSNT_05484___    439 GTGTTCTATGGCGTGAATTATGCAGC-----TGCAGAGGATATTTCAC--    481
                     |.|.|.||.||.|     ||.|||||     |||.|.||.|||    |  
RBAM_033150__    448 GCGATGTACGGGG-----TAAGCAGCGCCGATGCTGCGGCTAT----CCG    488

BSNT_05484___    482 --ACAGTGCAAAACGGTTAGCCGAATACATTCAGCAGCCTTTTGTTTAA    528
                       |||.|||.|||||..|.||.||.|||||..||.||||.|   ||||.
RBAM_033150__    489 TGACAATGCCAAACGCCTGGCGGATTACATAAAGAAGCCAT---TTTAG    534


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_05484 and RBAM_033150

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
