Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_05482 and RBAM_033140

See Amino acid alignment / Visit BSNT_05482 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:58
# Commandline: needle
#    -asequence dna-align/BSNT_05482___ywsB.1.9828.seq
#    -bsequence dna-align/RBAM_033140___ywsB.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05482___ywsB-RBAM_033140___ywsB.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05482___ywsB-RBAM_033140___ywsB.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05482___ywsB
# 2: RBAM_033140___ywsB
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 571
# Identity:     381/571 (66.7%)
# Similarity:   381/571 (66.7%)
# Gaps:          71/571 (12.4%)
# Score: 1233.5
# 
#
#=======================================

BSNT_05482___      1 ATGAACAAACCAACAAAA-------CTATTTTCAACATTAGCACTTGCGG     43
                     |||||.|||.||.|.|||       |.|||.|.|       |.|||||.|
RBAM_033140__      1 ATGAAGAAAACAGCCAAAGCGGCATCCATTCTGA-------CCCTTGCAG     43

BSNT_05482___     44 CTGGAATGACTGCGGCTACTGCAGGCGG-----CGCTGGAACGATCTATG     88
                     |.|||||.||.||||||.|.||.|.|||     |||         ||.|.
RBAM_033140__     44 CGGGAATAACAGCGGCTTCAGCTGCCGGAATAACGC---------CTCTT     84

BSNT_05482___     89 CCC----AACAGCCAGAAACAACGGTAAGCATTGATGATTTATACAGTTA    134
                     |||    .|||..||.||..|.||||.|..|||||.|||.|.|||||.||
RBAM_033140__     85 CCCGAGACACACGCACAAGAAGCGGTCAAAATTGACGATCTGTACAGCTA    134

BSNT_05482___    135 TCCGATTGATTCTTATTTGGTATCAGCAGAGGCTCTAAATGTCAGAACGA    184
                     .|||.||||.||||||.|.||.||.||.||.||..|.||.||||||||.|
RBAM_033140__    135 CCCGCTTGACTCTTATCTCGTTTCCGCGGAAGCATTGAACGTCAGAACAA    184

BSNT_05482___    185 AGCCTTCCGCATCAAGCCAGAAAGCCGATACGCTGCACTTAGGAGATAGC    234
                     |..|.||.|||.|.||.|.||.|||.|||||.||.||.||.||.||.|||
RBAM_033140__    185 AAGCATCAGCAGCCAGTCCGAGAGCTGATACCCTTCATTTGGGCGACAGC    234

BSNT_05482___    235 CTAAAGCTGATTTCCTTCTCA-AATGCTGACTGGGCAAAGGTTCATTATA    283
                     .|||||.|..||||.||| || ||.||||||||||||||.||.|||||||
RBAM_033140__    235 TTAAAGATCGTTTCATTC-CAGAACGCTGACTGGGCAAAAGTACATTATA    283

BSNT_05482___    284 AAAACGGAAAAACAGGCTTTGTCTCCACTCATTATATTGTAAAAGCAGCA    333
                     ||||||||||||||||.|||||.||.||||||||||||||.||||.||||
RBAM_033140__    284 AAAACGGAAAAACAGGATTTGTATCTACTCATTATATTGTTAAAGAAGCA    333

BSNT_05482___    334 ACAACAGTAAAAACCAAAACAAAAACGAAAGTATACACATCCGCTGACGG    383
                     |||||.||||||||.|..|.||||||.||||||||.|||      |||  
RBAM_033140__    334 ACAACCGTAAAAACGACGAAAAAAACAAAAGTATATACA------GAC--    375

BSNT_05482___    384 AAA-GAGCATT--AAGACTCTTCC--AGC---AGACACAAGCGTTTCTTT    425
                     ||| .|||..|  |||   |||||  .||   |.||||.|||||||||||
RBAM_033140__    376 AAACAAGCGGTCAAAG---CTTCCCTTGCTAAAAACACGAGCGTTTCTTT    422

BSNT_05482___    426 TTTAGGCTGGAGTAAAACGAATAAA------GGCGGTTTTGATTTTGATT    469
                     ..|.||.||||..||.||      |      |||||..||||.||.|..|
RBAM_033140__    423 CCTCGGATGGAAAAAGAC------AGCCGGCGGCGGCATTGACTTCGGCT    466

BSNT_05482___    470 GGGTATTCGTTGATTACGGCGGTGCGACAGGTTATATGAAAACAAAGGAT    519
                     |||...|.||.||||||||.||.||.||.||.|||||.|..|||||.|||
RBAM_033140__    467 GGGCGCTTGTCGATTACGGGGGCGCAACGGGATATATCAGCACAAAAGAT    516

BSNT_05482___    520 TTACACA---TGACAAAATAA    537
                     .|.||.|   |||||.||   
RBAM_033140__    517 CTGCAAAAACTGACATAA---    534


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