Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05479 and RBAM_033110
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:58
# Commandline: needle
# -asequence dna-align/BSNT_05479___rbsA.1.9828.seq
# -bsequence dna-align/RBAM_033110___rbsA.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05479___rbsA-RBAM_033110___rbsA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05479___rbsA-RBAM_033110___rbsA.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05479___rbsA
# 2: RBAM_033110___rbsA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1508
# Identity: 1151/1508 (76.3%)
# Similarity: 1151/1508 (76.3%)
# Gaps: 40/1508 ( 2.7%)
# Score: 4321.0
#
#
#=======================================
BSNT_05479___ 1 ATGCAGATTGAAATGAAAGACATTCATAAAGCATTCGGAAAAAACCAGGT 50
|||||.||.|..||||.|||||||||||||||||||||.||||||||.||
RBAM_033110__ 1 ATGCACATCGGCATGACAGACATTCATAAAGCATTCGGCAAAAACCAAGT 50
BSNT_05479___ 51 GCTATCAGGCGTTTCTTTTCAGCTCTTACCTGGCGAGGTTCACGCGTTAA 100
|||.||.|||||.||.|||.||||..|.||.||.||..|.|||||.||||
RBAM_033110__ 51 GCTCTCCGGCGTCTCATTTGAGCTTCTGCCGGGAGAAATCCACGCTTTAA 100
BSNT_05479___ 101 TGGGAGAAAACGGCGCCGGCAAGTCCACGCTTATGAACATTCTGACAGGC 150
|||||||||||||.||.|||||.||.|||.|.|||||..|.||.||.||.
RBAM_033110__ 101 TGGGAGAAAACGGAGCGGGCAAATCGACGTTAATGAATCTGCTCACCGGG 150
BSNT_05479___ 151 CTGCACAAATCGGAT---CAAGGTCAA-ATCAGCATAAACGGAAACGAAA 196
||..|| |||.| |||||..|| ||.|..|||||||||| .|||
RBAM_033110__ 151 CTCTAC----CGGCTCGACAAGGGAAACATTACGATAAACGGAA--CAAA 194
BSNT_05479___ 197 CGTAT----TTTTCCAATCCGAAAGAAGCAGAACAGCATGGAATAGCCTT 242
||| ||.||||||||.||.|||||.|||.||||.|||||.|||||
RBAM_033110__ 195 --TATGAGCTTCTCCAATCCAAAGGAAGCCGAAAAGCACGGAATCGCCTT 242
BSNT_05479___ 243 TATCCATCAGGAATTGAATATCTGGCCGGAAATGACTGTTCTGGAGAATC 292
|||||||||||||.|||||||.||||||||.|||||.||.||.||.||.|
RBAM_033110__ 243 TATCCATCAGGAACTGAATATATGGCCGGACATGACGGTGCTTGAAAACC 292
BSNT_05479___ 293 TATTTATCGGTAAAGAGATATCCTCCAAGCTGGGCGTTTTACAAAC-AAG 341
|.||||||||.||||||.|..|..|...|.|.||||||||..|||| |||
RBAM_033110__ 293 TTTTTATCGGCAAAGAGCTGACGACGGCGTTCGGCGTTTTGGAAACGAAG 342
BSNT_05479___ 342 AAAAATGAAAGCGCTAGCAAAAGAGCAATTTGACAAACTCTCTGTCTCTC 391
|||||||||||||||||||||...||..||||.|||.|....|||||||
RBAM_033110__ 343 -AAAATGAAAGCGCTAGCAAAATCACAGCTTGAAAAATTGGGAGTCTCTC 391
BSNT_05479___ 392 TTTCTCTCGATCAAGAAGCCGGCGAATGTTCTGTCGGACAGCAGCAAATG 441
||.||||.||.|..||||||||..|||||||.||||||||||||||.|||
RBAM_033110__ 392 TTCCTCTTGACCGGGAAGCCGGACAATGTTCCGTCGGACAGCAGCAGATG 441
BSNT_05479___ 442 ATCGAAATCGCAAAAGCGCTTATGACAAATGCCGAGGTAATCATTATGGA 491
||.||.||.||.||||||||.||||||||.|||||.||.||.||||||||
RBAM_033110__ 442 ATTGAGATTGCCAAAGCGCTGATGACAAACGCCGAAGTCATTATTATGGA 491
BSNT_05479___ 492 TGAACCGACCGCAGCGTTGACTGAACGTGAAATCAGCAAGCTCTTTGAGG 541
.|||||||||||.|||.||||.|||||.|||||||||||.||.|||||.|
RBAM_033110__ 492 CGAACCGACCGCGGCGCTGACCGAACGGGAAATCAGCAAACTGTTTGACG 541
BSNT_05479___ 542 TCATTACAGCGTTAAAAAAGAACGGCGTCTCCATTGTCTATATTTCGCAT 591
|.||.||.||||||||...|.|||||||.|||||.||||||||||||||.
RBAM_033110__ 542 TGATGACGGCGTTAAAGCGGGACGGCGTATCCATCGTCTATATTTCGCAC 591
BSNT_05479___ 592 CGCATGGAAGAAATTTTTGCGATTTGCGACAGAATTACCATCATGCGTGA 641
||.||||||||.||.|||.|||||||||||.|.||.|||||.|||||.||
RBAM_033110__ 592 CGAATGGAAGAGATATTTTCGATTTGCGACCGGATCACCATTATGCGGGA 641
BSNT_05479___ 642 CGGAAAAACGGTGGATACAACAAACATCTCAGAAACTGATTTTGATGACG 691
|||....||.||.|||||..|..|.||...|||.|||.||||||||||.|
RBAM_033110__ 642 CGGCCTCACTGTCGATACGGCGCATATGAAAGACACTAATTTTGATGAAG 691
BSNT_05479___ 692 TCGTCAAAAAAATGGTCGGACGGGAGCTGACTGAACGATATCCAAAACGC 741
|.|||||||||||||||||.|||||||||||.||.||.|||||.|..|||
RBAM_033110__ 692 TGGTCAAAAAAATGGTCGGGCGGGAGCTGACCGATCGGTATCCGACTCGC 741
BSNT_05479___ 742 ACTCCTTCTCTCGGTGACAAAGTATTCGAGGTGAAAAATGCCTCTGTAAA 791
||.||.||.|||||.||.||.||..||||.||||||||.|||||...|||
RBAM_033110__ 742 ACGCCGTCACTCGGCGATAAGGTGCTCGAAGTGAAAAACGCCTCAAAAAA 791
BSNT_05479___ 792 AGGGAG-TTTTGA-AGATGTCAGCTTTTATGTTCGGTCCGGTGAAATCGT 839
|||.|| ||||.| ||| ||||.||..||||..|..||||.||||||.|
RBAM_033110__ 792 AGGAAGCTTTTCACAGA--TCAGTTTCCATGTGAGCGCCGGAGAAATCCT 839
BSNT_05479___ 840 CGGTGTTTCAGGATTGATGGGAGCCGGCCGTACAGAAATGATGAGAGCGC 889
|||.|||||.||.||.|||||.|||||.||.||||||||.|||||.||||
RBAM_033110__ 840 CGGCGTTTCCGGCTTAATGGGTGCCGGACGGACAGAAATCATGAGGGCGC 889
BSNT_05479___ 890 TGTTCGGCGTTGACAGGCTGGACACGGGTGAGATATGGATCGCTGG--GA 937
|||||||..||||||||||.||..|.||.|||||.|||||..|.|| |
RBAM_033110__ 890 TGTTCGGAATTGACAGGCTCGATTCCGGAGAGATCTGGATTTCCGGCCG- 938
BSNT_05479___ 938 AAAAAACGGCTATTAAGAACCCGCAGGAAGCCGTGAAAAAAGGTCTCGGC 987
|||||.|||| |||..|...|||.|.||.|||.|....||.||.||||||
RBAM_033110__ 939 AAAAACCGGC-ATTCGGGGTCCGTACGATGCCATTCGCAAGGGACTCGGC 987
BSNT_05479___ 988 TTTATTACAGAGAATCGCAAGGATGAAGGGCTCCTGCTCGACACCTCGAT 1037
.|.|||||.|||||.|||||.|||||||||||.|||||.||.||.||.||
RBAM_033110__ 988 CTGATTACGGAGAACCGCAAAGATGAAGGGCTGCTGCTGGATACGTCCAT 1037
BSNT_05479___ 1038 CCGCGAAAATATTGCCCTGCCCAATCTGTCCAGCTTCTCACCAAAGGGGC 1087
.||.||||||||..||.||||.||.|||.||||||||||.||.||.||..
RBAM_033110__ 1038 TCGTGAAAATATCTCCTTGCCGAACCTGACCAGCTTCTCTCCGAAAGGCA 1087
BSNT_05479___ 1088 TCATTGATCACAAGCGGGAGGCTGAGTTTGTCGATCTGTTAATTAAACGC 1137
|||||||||..||.||.|||||.|||||.||.||.|||.|.||.||.||.
RBAM_033110__ 1088 TCATTGATCGAAAACGCGAGGCGGAGTTCGTTGAGCTGCTCATCAAGCGT 1137
BSNT_05479___ 1138 CTCACTATCAAAACAGCATCACCGGAAA-CGCACGCACGCCATTTGTCAG 1186
||.||.||.||.||.|||||.||||||| ||| |||.||.|||||.||||
RBAM_033110__ 1138 CTGACCATTAAGACCGCATCTCCGGAAACCGC-CGCCCGGCATTTATCAG 1186
BSNT_05479___ 1187 GTGGAAACCAGCAAAAAGTGGTGATAGCCAAGTGGATCGGCATCGGACTG 1236
|.|||||.|||||||||||.||.||.|||||.||||||||.|||||.|.|
RBAM_033110__ 1187 GAGGAAATCAGCAAAAAGTCGTCATCGCCAAATGGATCGGAATCGGCCCG 1236
BSNT_05479___ 1237 AAAGTGCTTATCTTGGATGAGCCAACCAGAGGTGTGGATGTTGGCGCCAA 1286
|||||.||.|||.|.|||||.||.||.|||||.||.||.||.|||||.||
RBAM_033110__ 1237 AAAGTTCTCATCCTTGATGAACCGACAAGAGGCGTTGACGTAGGCGCGAA 1286
BSNT_05479___ 1287 ACGAGAGATTTATACGCTGATGAATGAGCTGACCGAACGCGGCGTCGCTA 1336
|.|.||.||.|||.|..|.||||||||.||||||||.|||||.|||||.|
RBAM_033110__ 1287 AAGGGAAATCTATTCATTAATGAATGAACTGACCGATCGCGGAGTCGCCA 1336
BSNT_05479___ 1337 TCATCATGGTGTCATCAGAGCTGCCTGAAATTCTGGGAATGAGCGATCGG 1386
|||||||||||||.||.||||||||.||||||||.||.|||||.||..|.
RBAM_033110__ 1337 TCATCATGGTGTCTTCCGAGCTGCCGGAAATTCTCGGCATGAGTGACAGA 1386
BSNT_05479___ 1387 ATTATCGTTGTCCATGAAGGCAGAATCAGCGGAGAAATCCATGCGCGAGA 1436
||.|||||.|||||.|||||..|.|||||||||||||||.|||||...|.
RBAM_033110__ 1387 ATCATCGTCGTCCACGAAGGGCGCATCAGCGGAGAAATCAATGCGGCCGG 1436
BSNT_05479___ 1437 AGCAACACAAGAACGAATTATGACACTTGCCACGGGAGGGCGGTAA---- 1482
.|||||||||||||..||.||||||||||||||||||||||.|.|.
RBAM_033110__ 1437 CGCAACACAAGAACACATCATGACACTTGCCACGGGAGGGCAGCAGTATG 1486
BSNT_05479___ 1482 -------- 1482
RBAM_033110__ 1487 AAAACTGA 1494
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