Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05478 and RBAM_033100
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:58
# Commandline: needle
# -asequence dna-align/BSNT_05478___rbsD.1.9828.seq
# -bsequence dna-align/RBAM_033100___rbsD.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05478___rbsD-RBAM_033100___rbsD.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05478___rbsD-RBAM_033100___rbsD.aln
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#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05478___rbsD
# 2: RBAM_033100___rbsD
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 412
# Identity: 289/412 (70.1%)
# Similarity: 289/412 (70.1%)
# Gaps: 32/412 ( 7.8%)
# Score: 941.5
#
#
#=======================================
BSNT_05478___ 1 ATGAAAAAACACGGTATACTGAACAGCCATCTTGCCAAGATTTTAGCAGA 50
||||||||||||||.||..|.||||||||..|||||||..|.|||||.||
RBAM_033100__ 1 ATGAAAAAACACGGAATGTTAAACAGCCACATTGCCAAAGTATTAGCTGA 50
BSNT_05478___ 51 CCTTGGCCACACTGATAAAATTGTCATCGCGGATGCCGGACTGCCGGTTC 100
.||.||.||.||.||....||.|..|||||.|||||.||.||.||.||.|
RBAM_033100__ 51 TCTCGGGCATACAGACCTCATCGCAATCGCCGATGCGGGTCTCCCCGTCC 100
BSNT_05478___ 101 CCGACGGCGTTTTG-----AAAATTGATCTTTCACTGAA-GCCGGGCCTT 144
|.||||| || |||||||||.|.|| ||.|| |.|||||.||
RBAM_033100__ 101 CTGACGG-----TGCCCCTAAAATTGATTTGTC-CTTAACGGCGGGCGTT 144
BSNT_05478___ 145 -CCGGCTTTC----CAAGATACAGCGGCAGTACTG---GCTGAGGAAATG 186
|||.||||| |..|| .|||| ||| ||.|.|||.|||
RBAM_033100__ 145 CCCGCCTTTCGGGACGTGA-CCAGC-------CTGGTAGCCGGGGAGATG 186
BSNT_05478___ 187 GCGGTCGAAAAAGTCATTGCTGCAGCTGAAATAAAAGCATCCAATCAGGA 236
||.||||||||.||.||.||.||..|.||.||.||||...|.||.|..||
RBAM_033100__ 187 GCAGTCGAAAAGGTGATCGCCGCTTCCGAGATCAAAGACGCAAACCCTGA 236
BSNT_05478___ 237 GAATGCGAGATTTC-TAGAAAATCTTTTCTCTGAACAAGA-GATTGAATA 284
||||||.|| |||| ||||||..|.||||||.|..| ||| |||.||.||
RBAM_033100__ 237 GAATGCAAG-TTTCATAGAAAGCCATTTCTCAGCGC-AGACGATCGAGTA 284
BSNT_05478___ 285 CCTTTCTCACGAGGAGTTTAAGCTGCTGACAAAAGAAGCAAAGGCAGTCA 334
|.|.||.||.|||||.||.||.|.|||.|||.|..|||||||.||.||||
RBAM_033100__ 285 CATGTCCCATGAGGAATTCAAACGGCTCACACAGAAAGCAAAAGCCGTCA 334
BSNT_05478___ 335 TAAGAACAGGAGAATTCACACAGTATGCCAACTGCATCCTGCAGGCGGGT 384
|..||||.||.|||.|.||||..||.||||||||||||||||||||||||
RBAM_033100__ 335 TCCGAACGGGTGAAATGACACCATACGCCAACTGCATCCTGCAGGCGGGT 384
BSNT_05478___ 385 GTGCTTTTCTAG 396
|||.||||||||
RBAM_033100__ 385 GTGATTTTCTAG 396
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