Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
DNA alignment: BSNT_05474 and RBAM_033080
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# Program: needle
# Rundate: Mon 8 Mar 2010 06:27:58
# Commandline: needle
# -asequence dna-align/BSNT_05474___rbsR.1.9828.seq
# -bsequence dna-align/RBAM_033080___rbsR.2.9828.seq
# -gapopen 10
# -gapextend 0.5
# -outfile dna-align/BSNT_05474___rbsR-RBAM_033080___rbsR.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05474___rbsR-RBAM_033080___rbsR.aln
########################################
#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05474___rbsR
# 2: RBAM_033080___rbsR
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 1015
# Identity: 748/1015 (73.7%)
# Similarity: 748/1015 (73.7%)
# Gaps: 47/1015 ( 4.6%)
# Score: 2657.5
#
#
#=======================================
BSNT_05474___ 1 ---TTGGCTACAATTAAAGATGTCGCCGGAGCGGCGGGCGTTTCAGTTGC 47
|||||.||.||||||||||||||.||.||.||.|||||.||.|||||
RBAM_033080__ 1 TTGTTGGCAACGATTAAAGATGTCGCAGGCGCTGCCGGCGTCTCTGTTGC 50
BSNT_05474___ 48 GACGGTTTCCCGCGTCCTGAATGATAACGGCTATGTACACGAAGTAACGC 97
.||||||||.||.|||||.|||||.||||||||.||.||.||||..||.|
RBAM_033080__ 51 CACGGTTTCGCGTGTCCTCAATGACAACGGCTACGTGCATGAAGATACAC 100
BSNT_05474___ 98 GAACGCGTGTCATAGC-GGCGATGGCGAAGCTGAACTATTACCCGAATGA 146
|||||...||||| || .||.||||.|||||||||.|||||.||||||||
RBAM_033080__ 101 GAACGAAGGTCAT-GCTTGCCATGGAGAAGCTGAATTATTATCCGAATGA 149
BSNT_05474___ 147 AGTTGCCAGATCTCTATATAAAAGAGAATCCCGACTGATCGGACTTTTGC 196
|||||||.|.|||||.|||||||||||||||.|||||.||||.|||||||
RBAM_033080__ 150 AGTTGCCCGCTCTCTTTATAAAAGAGAATCCAGACTGGTCGGGCTTTTGC 199
BSNT_05474___ 197 TCCCGGATATCAC-AAACCCTTTCTTCCCCCAGCTTGCCCGCGGTGCGGA 245
|.||||||||.|| ||.|||||| |||||.||||||||||||||.||.||
RBAM_033080__ 200 TTCCGGATATTACGAATCCCTTT-TTCCCTCAGCTTGCCCGCGGCGCTGA 248
BSNT_05474___ 246 GGATGAATTGAACCGGGAAGGCTATCGCCTTATTTTCGGCAACAGTGACG 295
.||.||.|||.|.||||||||.||.||.||.||..||||||||||.||.|
RBAM_033080__ 249 AGACGAGTTGCAGCGGGAAGGATACCGGCTGATCATCGGCAACAGCGATG 298
BSNT_05474___ 296 AGGAATTGAAAAAAGAACTTGAATACCTTCAAACCTTTAAGCAAAATCAT 345
|.||||||.||||||||||.||.|||||.|||||.|||||.||||||||.
RBAM_033080__ 299 AAGAATTGGAAAAAGAACTCGACTACCTGCAAACATTTAAACAAAATCAA 348
BSNT_05474___ 346 GTCGCAGGCATTATTGCCGCAACGAATTACCCGGATCTCGAGGAATACAG 395
||.||.||.|||.|.||.||.||..|||||||.||.||....||||||||
RBAM_033080__ 349 GTTGCCGGTATTTTGGCGGCCACCCATTACCCCGACCTTCCCGAATACAG 398
BSNT_05474___ 396 CGGCATGAATTATCCCGTTGTTTTTCTGGACAGAACACTGGAAGGGGCTC 445
|||||....|||.||.||.||.|||||||||.|.|||...|||||.||.|
RBAM_033080__ 399 CGGCAGCCTTTACCCGGTCGTATTTCTGGACCGGACAAAAGAAGGCGCCC 448
BSNT_05474___ 446 CTTCTGTGTCCAGTGACGGCTATACAGGAGGAAAGTTAGCCGCTCAGGCT 495
|.||.||.|.|||||||||.....||||.|||||....||.|||.|||..
RBAM_033080__ 449 CATCCGTATTCAGTGACGGGCGGGCAGGCGGAAAACGGGCGGCTGAGGAA 498
BSNT_05474___ 496 ATCATTCACGGAAAAAGC-CAGCGCATTACGCTCTTGAGAGGACCCGCTC 544
||..|||.|||.|||||| || .||||.|||||..|.|.|||.||.||.|
RBAM_033080__ 499 ATGCTTCGCGGCAAAAGCACA-AGCATCACGCTTGTCAAAGGCCCAGCCC 547
BSNT_05474___ 545 ACCTGCCGACCGCTCAAGACCGCTTTAATGGCG--CTT-------TGGAA 585
||||.|||||||||||.||.||.|||||.|||| ||| ||.||
RBAM_033080__ 548 ACCTTCCGACCGCTCAGGAACGTTTTAACGGCGCACTTGATGTGCTGCAA 597
BSNT_05474___ 586 ATCTTAAAGCAGGC-TGAAGTTGAGTTTCAGGTCAT-TGAGACCGCTTCA 633
|||||.||| .|..|||.| |.||||| |..| ||||||||
RBAM_033080__ 598 -----AAAGCGGGCGCGCCGTTCA-----ATGTCATCTCCG-CCGCTTCA 636
BSNT_05474___ 634 TTTTCTATTAAAGATGCACAATCG--AT----GGCGAAGGAGCTGTTTGC 677
|||||.||.||.||||| || || |..||| ||..|||||||
RBAM_033080__ 637 TTTTCCATCAAGGATGC-----CGCCATTTTAGCAGAA-GAATTGTTTGC 680
BSNT_05474___ 678 CGCTTATCCAGCGACAGATGGTGTAATCGCGAGTAATGATATTCAAGCCG 727
.||.||.||.|..||.||.||.||.||.||.||.||.||.|||...||.|
RBAM_033080__ 681 AGCATACCCTGAAACCGACGGAGTCATTGCCAGCAACGACATTGCGGCGG 730
BSNT_05474___ 728 CTGCCGTTTTACATGAAGCATTGCGGCGCGGAAAAAACGTGCCGGAGGAC 777
|||||||..|.|||||.||..||||||.|||.|||||.||.||||||||.
RBAM_033080__ 731 CTGCCGTCCTCCATGAGGCGCTGCGGCTCGGCAAAAAAGTTCCGGAGGAG 780
BSNT_05474___ 778 ATTCAAATTATCGGCTATGATGACATTCCGCAAAGCGGACTTCTGTTCCC 827
|||||.||.|||||.||.||.||.||||||||.|||.|.|||.||||.||
RBAM_033080__ 781 ATTCAGATCATCGGATACGACGATATTCCGCAGAGCAGGCTTTTGTTTCC 830
BSNT_05474___ 828 GCCACTTTCTACAATTAAACAGCCCGCATATGATATGGGAAGAGAAGCTG 877
|||.|||||.||.||....|||||.||||||||.|||||||.|.||||.|
RBAM_033080__ 831 GCCGCTTTCAACCATCCGCCAGCCTGCATATGAGATGGGAAAACAAGCAG 880
BSNT_05474___ 878 CCAAACTGCTTTTGGGCA--TCATCAAAAAACAGCCGCTGGCAGAAACGG 925
|.||.|||||..| ||| |.||.||.|||.||||||.|..|||.||||
RBAM_033080__ 881 CAAACCTGCTGCT--GCAATTGATAAAGAAAGAGCCGCCGAAAGAGACGG 928
BSNT_05474___ 926 CAATTCAAATGCCTGTCACCTATATAGGAAGAAAGACGACAAGAAAGGAA 975
|.|||||||||||.||.||.||.|||.|||||.|.||||||||||||||.
RBAM_033080__ 929 CCATTCAAATGCCCGTGACTTACATAAGAAGACAAACGACAAGAAAGGAT 978
BSNT_05474___ 976 GATTACGATGCGTAA 990
|||.||.|||.||.|
RBAM_033080__ 979 GATCACCATGAGTGA 993
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