Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

Home

About

Browser

Genes

Download

Publications

DNA alignment: BSNT_05471 and RBAM_033030

See Amino acid alignment / Visit BSNT_05471 in genome browser / Return to Orthologue table

########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:27:57
# Commandline: needle
#    -asequence dna-align/BSNT_05471___ywtA.1.9828.seq
#    -bsequence dna-align/RBAM_033030___ywtA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_05471___ywtA-RBAM_033030___ywtA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_05471___ywtA-RBAM_033030___ywtA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_05471___ywtA
# 2: RBAM_033030___ywtA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 451
# Identity:     378/451 (83.8%)
# Similarity:   378/451 (83.8%)
# Gaps:           2/451 ( 0.4%)
# Score: 1586.0
# 
#
#=======================================

BSNT_05471___      1 ATGTTCGGATCAGATTTATACATCGCACTAATTTTAGGTGTACTACTCAG     50
                     ||||||||||||||||||||||||.||||.||||||||.||..||.||||
RBAM_033030__      1 ATGTTCGGATCAGATTTATACATCTCACTTATTTTAGGCGTGTTAATCAG     50

BSNT_05471___     51 TTTAATTTTTGCGGAAAAAACAGGGATCGTGCCGGCAGGACTGGTTGTAC    100
                     |||||||||.||||||||||||||.|||||.||.||.||..|.||.||.|
RBAM_033030__     51 TTTAATTTTCGCGGAAAAAACAGGTATCGTACCTGCCGGTTTAGTCGTGC    100

BSNT_05471___    101 CGGGATATTTAGGACTTGTGTTTAATCAGCCGGTCTTTATTTTACTTGTT    150
                     ||||.||||||||.||.||.|||||.||||||||||||||||||||.||.
RBAM_033030__    101 CGGGTTATTTAGGGCTCGTTTTTAACCAGCCGGTCTTTATTTTACTCGTA    150

BSNT_05471___    151 TTGCTAGTGAG-CTTGCTCACTTATGTTATCGTGAAATACGGTTTATCCA    199
                     |||.||||||| ||| ||.||.||.||.|||||.||||||||||||||||
RBAM_033030__    151 TTGTTAGTGAGTCTT-CTTACATACGTGATCGTCAAATACGGTTTATCCA    199

BSNT_05471___    200 AATTTATGATTTTGTACGGACGCAGAAAATTTGCTGCCATGCTGATAACA    249
                     .||||||||||||||||||||||||||||||.||.||||||||||||||.
RBAM_033030__    200 GATTTATGATTTTGTACGGACGCAGAAAATTCGCAGCCATGCTGATAACG    249

BSNT_05471___    250 GGGATCGTCCTAAAAATCGCGTTTGATTTTCTATACCCGATTGTACCATT    299
                     ||.|||..|.||||||||||..|||||||.||.||||||||.|||||.||
RBAM_033030__    250 GGAATCTGCTTAAAAATCGCCCTTGATTTCCTTTACCCGATCGTACCGTT    299

BSNT_05471___    300 TGAAATCGCAGAATTTCGAGGAATCGGCATCATCGTGCCAGGTTTAATTG    349
                     |||.||..|||||||.||.||||||||.||||||||.||.|||.|.||.|
RBAM_033030__    300 TGAGATATCAGAATTCCGCGGAATCGGTATCATCGTACCGGGTCTGATCG    349

BSNT_05471___    350 CCAATACCATTCAGAAACAAGGTTTAACCATTACGTTCGGAAGCACGCTG    399
                     |||||||||||||||||||.||.|||||.|||||.||.|..|||||||||
RBAM_033030__    350 CCAATACCATTCAGAAACAGGGATTAACGATTACATTTGCCAGCACGCTG    399

BSNT_05471___    400 CTATTGAGCGGAGCGACCTTTGCTATCATGTTTGTTTACTACTTAATTTA    449
                     .|.||.|||||.||.||.|||||.||.|||||||.||||||||||||.||
RBAM_033030__    400 TTCTTAAGCGGCGCAACTTTTGCCATTATGTTTGCTTACTACTTAATCTA    449

BSNT_05471___    450 A    450
                     |
RBAM_033030__    450 A    450


#---------------------------------------
#---------------------------------------

Copyright (C) Natto Genome Project, 2009-2010. All rights reserved.