Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195

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DNA alignment: BSNT_04424 and RBAM_032990

See Amino acid alignment / Visit BSNT_04424 in genome browser / Return to Orthologue table
########################################
# Program: needle
# Rundate: Mon  8 Mar 2010 06:26:53
# Commandline: needle
#    -asequence dna-align/BSNT_04424___yttA.1.9828.seq
#    -bsequence dna-align/RBAM_032990___yttA.2.9828.seq
#    -gapopen 10
#    -gapextend 0.5
#    -outfile dna-align/BSNT_04424___yttA-RBAM_032990___yttA.aln
# Align_format: srspair
# Report_file: dna-align/BSNT_04424___yttA-RBAM_032990___yttA.aln
########################################

#=======================================
#
# Aligned_sequences: 2
# 1: BSNT_04424___yttA
# 2: RBAM_032990___yttA
# Matrix: EDNAFULL
# Gap_penalty: 10.0
# Extend_penalty: 0.5
#
# Length: 823
# Identity:     489/823 (59.4%)
# Similarity:   489/823 (59.4%)
# Gaps:         164/823 (19.9%)
# Score: 1365.0
# 
#
#=======================================

BSNT_04424___      1 ----------ATGGAAATGGTATTAGCATTCTTAGGTTTTCTGGCATGTC     40
                               |||.||..|.|||||       ||||.|.|.|.||.|.||
RBAM_032990__      1 ATGATGTCGAATGCAATCGCTATTA-------TAGGATGTTTAGCTTTTC     43

BSNT_04424___     41 TCATTGCACTGGGCTATGGATTATATCACCTTGTCAGATATGTACTG---     87
                     ||...|||.|.||.||.|||.|||..|||||     .|||||.|..|   
RBAM_032990__     44 TCTGCGCAGTCGGATACGGAATATTCCACCT-----CATATGCAAAGCGG     88

BSNT_04424___     88 --AAAAAGGAAAAACGTTTCTCAAAGAGACTTTTTTGGCCGCTTTTCATT    135
                       |||||.|||||||||||.|||||.|..||.||||||||.|||.||||.
RBAM_032990__     89 CCAAAAAAGAAAAACGTTTTTCAAAAAAGCTGTTTTGGCCCCTTCTCATC    138

BSNT_04424___    136 GGAGGCCTTGTGCTGCTCTTTACCGGGGCAGCATTGGCAGAACCTGACAC    185
                     ||.||..||.|.|||||..|.|||||.||..|..|.|||||.||.|||.|
RBAM_032990__    139 GGCGGATTTATCCTGCTTCTGACCGGCGCCTCCCTCGCAGAGCCGGACGC    188

BSNT_04424___    186 TGCCGCAGCAAATGCCGAGAAAAAATATTCAGC------GCTAAACGCCG    229
                     ..|.||.|..||.||.|||.|.|||||  ||||      |.||    |||
RBAM_032990__    189 CTCGGCCGTGAAGGCAGAGGAGAAATA--CAGCACCCTTGATA----CCG    232

BSNT_04424___    230 AATATAAAAACCTCACAAAAGAGCACGAAGAACTTGAGAAAGAATATAA-    278
                     ..|||.||||..|.||.||.||.|||.|.|..|||||||||.|||||.| 
RBAM_032990__    233 CTTATCAAAAATTGACGAAGGAACACCAGGCGCTTGAGAAAAAATATGAA    282

BSNT_04424___    279 ---ATCTGT-CAGC-TCTGAAGCAA--AGAAATTAAAAGACAACAAAGAA    321
                        |||.|| |.|| .|.|||  ||  ||||||...|||.|      |||
RBAM_032990__    283 AGCATCAGTGCCGCGGCCGAA--AAGGAGAAATCCGAAGCC------GAA    324

BSNT_04424___    322 G------ATCAAGACAAGCTTGAGAAGCTTAAAAAC--------GAAAAT    357
                     |      ||.||||.||.||    .|||    ||||        ||.|..
RBAM_032990__    325 GCCGGCAATGAAGAAAAACT----CAGC----AAACTCAGCCAAGAGATA    366

BSNT_04424___    358 AGCGATCTAAAAAAGACTCAGAAATCATTAAAAGC-------TGAG--AT    398
                     |||||.||.|||||.||..|.||||||.|.||| |       ||||  ||
RBAM_032990__    367 AGCGAGCTGAAAAAAACAAACAAATCACTCAAA-CAAGACAATGAGAAAT    415

BSNT_04424___    399 TAAAGAGCTTCAAGAAAAT---CAAAAGCAGCTCAAAGAAGA-TGCAAAA    444
                     |||           |||||   ||||||.|||||.|| |||| .||..||
RBAM_032990__    416 TAA-----------AAAATTCACAAAAGAAGCTCGAA-AAGACCGCTGAA    453

BSNT_04424___    445 ACGGCAAAGGCTGAAAATGAAACACTCCGACAAG----ATAAAACA-AAG    489
                     |||....||.|.||||||.||||..|    .|||    |.|||.|| |||
RBAM_032990__    454 ACGCTTCAGTCAGAAAATAAAACTTT----AAAGCGGCAGAAAGCAGAAG    499

BSNT_04424___    490 CTTGAAAATCAATTAAAA-----GAGA---CGGAAA----GCCAAAC--C    525
                     |   |.||.||   ||||     ||.|   ||||||    ||.||||  |
RBAM_032990__    500 C---AGAAACA---AAAACATCCGAAAACGCGGAAACGGCGCAAAACAAC    543

BSNT_04424___    526 GCCAGTT-CTCATGAAGACACTGGAAGTTCTTCAAACAATACGAGTAAAA    574
                     |||..|| |||..|..||||                              
RBAM_032990__    544 GCCCCTTCCTCCGGCGGACA------------------------------    563

BSNT_04424___    575 GTGATGAAACCAAAACAGCTGACAAAGCAGAAGGCTGTAATATCAAAGGA    624
                      ||..|||||.|||.||||.|.||...||.|.||.||..|.||.|||||.
RBAM_032990__    564 -TGCCGAAACGAAAGCAGCCGGCACCTCACAGGGATGCGACATTAAAGGC    612

BSNT_04424___    625 AGCAAAAACGGCATCTACCACACGCCAGGCAGTACATACTACGACCGGAC    674
                     |||...||||||||.||.||||||||.||.||||||||||||||||||||
RBAM_032990__    613 AGCCGGAACGGCATTTATCACACGCCGGGAAGTACATACTACGACCGGAC    662

BSNT_04424___    675 AACCGATCCGGCTGAAATGTTTTGCTCAGTTGAAGAAGCTGAAGCCGCCG    724
                     .||.|||||.||.||||||||.||.||..|.||.||.||.|.|||.||||
RBAM_032990__    663 GACAGATCCCGCGGAAATGTTCTGTTCCATAGAGGATGCGGTAGCGGCCG    712

BSNT_04424___    725 GTTATCGGGCGCCAAAACGATAA    747
                     |.||..|.|||||.|||||.|||
RBAM_032990__    713 GATACAGAGCGCCGAAACGGTAA    735


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Natto Genome Project Bacillus subtilis subsp. natto str. BEST195

DNA alignment: BSNT_04424 and RBAM_032990

Natto Genome Project
Bacillus subtilis subsp. natto str. BEST195
